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Vol. 49, Issue 4, 343-368, December 1997
Departments of Anesthesia (R.G.E., J.S.J.), Physiology (R.G.E.), and Biochemistry and Biophysics (J.S.J.), and the Johnson Research Foundation (J.S.J.), University of Pennsylvania Medical Center, Philadelphia, Pennsylvania
I. Introduction
A. General
B. History
II. Anesthetic Binding to Protein
A. Equilibrium Kinetics
B. Thermodynamics
C. Binding Forces
1. The hydrophobic effect.
2. Electrostatic interactions.
D. Location and Character of Anesthetic Protein Binding Sites
1. Functional and equilibrium binding assays.
2. Spectroscopic approaches.
3. Direct photoaffinity labeling.
4. Crystallographic approaches.
5. Molecular genetics.
6. Binding site character summary.
III. Structural and Dynamic Consequences of Anesthetic Binding
A. Secondary Structure
B. Tertiary Structure
C. Quaternary Structure
IV. Summary
Acknowldgments
References
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I. Introduction |
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A. General
Inhaled anesthetics can alter the activity of a wide variety of
proteins, but the molecular nature of the interactions underlying the
functional effect is poorly understood. In this review, we present and
discuss the key evidence for potential molecular interactions with the
intent of demonstrating that the many functional effects of inhaled
anesthetics are mediated by direct interactions with protein. Although
the overall implication is, of course, that these direct interactions
ultimately underlie the behavioral state known as "anesthesia," we
emphasize that this is not intended to be a review of the various
theories of anesthetic action. We restrict this discussion to the more
fundamental question of how inhaled anesthetics interact with proteins
to alter their activity. At this point, too little is known about the
molecular targets of inhaled anesthetics to relate these fundamental
interactions to pharmacology. We will focus on soluble proteins,
because the binding and structural investigations in these generally
small proteins have been most productive and are not confounded by the presence of lipid, as in the case of membrane proteins. We recognize that soluble proteins may not mediate important components of anesthetic action; there seems to be consensus that membrane proteins serve this role (Pocock and Richards, 1991
; Franks and Lieb, 1994
; Harris et al., 1995
). However, the information derived from the soluble
proteins should allow an unambiguous definition of binding character
and energetics, and the local and global conformational consequences of
anesthetic binding, which almost certainly are relevant to the more
complex membrane proteins. Because of the large number of compounds
that can produce the behavioral state termed "anesthesia," we will
further restrict our focus to the inhalational anesthetics, including
those with vapor pressures higher than atmospheric at room temperature,
such as xenon and nitrous oxide. Although receptor-specific compounds
(such as
2-adrenergic agonists,
N-methyl-D-aspartate antagonists, opiates, and benzodiazepines) can
produce behavioral states resembling anesthesia, their much higher
affinity and specificity suggest that their molecular interactions are
different from those of general anesthetics, which are characterized by
low-affinity interactions and widespread effects. Even here, however,
there may be overlap in how high- and low-affinity compounds influence
the activity of proteins.
B. History
An interaction between inhalational anesthetics and protein was
first suggested by Claude Bernard (1875)
, who stated that diethyl ether
and chloroform produced a reversible coagulation of the
"albuminoid" cell contents and that this somehow caused anesthesia.
Later, Moore and Roaf (1904
, 1905
) reported that both ether and
chloroform were more soluble in serum or hemoglobin solutions than in
water or saline, suggesting some sort of attractive (binding)
interaction with the protein. Further, they proposed that the uptake of
anesthetics by "proteoid" rather than "lipoid" components was
responsible for the production of anesthesia. Countering this idea was
the independent work of Overton and Meyer, at about the same time,
resulting in the famous correlation of anesthetic potency and olive oil
solubility, indicating that anesthetics work by interacting with the
olive oil-like components of the cell (Lipnick, 1986
, 1989
; Miller,
1993
).
Nevertheless, observations in support of anesthetic interactions with protein continued. In 1915, Harvey reported that n-alkanols, diethyl ether, and chloroform reversibly depressed the luminescence of certain marine bacteria and that inhibitory potency correlated with n-alkanol chain length. Because the light from these microorganisms derives from the activity of specific enzymes, collectively called "luciferases," these observations suggested that not only could anesthetics bind to protein, but the binding could be associated with an alteration in protein activity. This early work spawned a whole series of more recent investigations with purified light-emitting proteins (see Sections II.B., II.D.1., III.B.) with the goal of demonstrating and characterizing direct anesthetic-protein interactions.
Extending studies on protein activity to protein structure,
Östergren (1944)
postulated that general anesthetics
such as the n-alkanols, nitrous oxide, chloroform and
trichloroethylene exert their effects on the lipophilic portion of
proteins, based on his observations of anesthetic effects on the
mitotic spindle. This speculation finally began to reconcile the
observations of Overton and Meyer with those of protein target
proponents. The interaction of anesthetics with these lipophilic
(hydrophobic) domains was hypothesized to lead to decreased flexibility
of the protein (Östergren, 1944
). Given the recent
appreciation for the importance of marginal stability and
conformational dynamics to protein function, this was a remarkably
precocious proposal.
Almost thirty years later, the description of the structure of the cell
membrane (Singer and Nicolson, 1972
), when combined with the
observations of Overton and Meyer, once again led the field of
anesthetic mechanisms research into the lipid bilayer, which
unfortunately has produced much ambiguity. Years of study have indeed
verified anesthetic influences on the properties of lipid bilayers
(Trudell, 1991
; Gruner and Shyamsunder, 1991
; Qin et al., 1995
; Cantor,
1997
), but quantitative problems and heterogeneity of anesthetic
effects have forced many investigators to refocus their attention to
protein, now with an improved appreciation of the importance of
hydrophobic forces to protein structure and function. Further, the
functional inseparability of lipid and protein in the cell membrane is
now better understood and thus provides a rich environment for
reconciliation of the lipid and protein proponents.
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II. Anesthetic Binding to Protein |
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A. Equilibrium Kinetics
For an anesthetic to have a direct effect on protein activity, it must first bind to the protein in some way. This has been a source of confusion, because, traditionally, anesthetics have been considered to partition into, and not necessarily bind to, biological macromolecules. However, the confusion arises from the fact that only weak binding forces are involved. Partitioning generally refers to the distribution of solute between two or more bulk solvents, whereas binding is generally viewed as a molecular event. Nevertheless, the two are clearly related. For example, excess partitioning of a compound into an aqueous solution of protein as compared with water alone is due to binding interactions with the protein. Even partitioning between bulk solvents can be considered to result from preferential binding of the solute to one solvent molecule as compared with the other. Favorable partitioning of halothane into octanol as compared with octane, for example, is probably due to weak electrostatic interactions (see Section II.C.2.) between the more polar octanol molecule and halothane. Several such electrostatic interactions acting in concert, combined with steric effects, produce the higher-affinity binding interactions between more familiar ligands and receptors. Therefore, the distinction between binding and partitioning is in reality more semantic than real.
It may also be necessary to adjust one's view as to the meanings of high and low affinity and specific and nonspecific binding in the context of anesthetic ligands with limited interactive capability. Specific binding is generally considered to be high-affinity and low-capacity (saturable) binding and is usually linked with drug action. Nonspecific binding is characterized as low-affinity and high-capacity binding and implies weak interactions at sites not relevant to a compound's principal pharmacological action. Nonetheless, specific and nonspecific are relative terms; even binding characterized as "nonspecific" for a given drug may be saturable with sufficiently high drug concentration and could produce functional effects distinct from those mediated by specific sites. The primary action of a high-affinity drug, like an opioid or a catecholamine, is in general produced at a drug concentration less than indicated by receptor Kd values, resulting in minimal nonspecific binding. "Anesthesia," on the other hand, occurs at an inhaled anesthetic concentration suspected of producing considerable nonspecific binding. Because inhaled anesthetics produce minimal detectable effects at much lower concentrations, it is likely that what would conventionally be termed "nonspecific binding" is important for the action of inhaled anesthetics. This is especially true in the case of the membrane proteins, given the relatively high concentration of drug in at least part of the protein's solvent (lipid), and the hydrophobicity of these proteins. On the other hand, the discrete, saturable anesthetic binding sites recently found in some soluble proteins, which better merit the term "specific", appear to mediate only modest functional consequences. Therefore, rather than forcing inhaled anesthetics into the familiar ligand-receptor mold, it will be necessary to view the interactions that these clinically important compounds have with protein with an unbiased eye to ultimately understand the underlying mechanisms of their many actions.
The binding of an anesthetic (Ab) to a protein target (P) can be described as follows:
|
(1) |
1, respectively. The dissociation constant
of this interaction, Kd, is defined by:
|
(2) |
What are the dissociation constants for inhalational anesthetics?
Initial estimates are possible. If we assume that anesthetic action
results from binding to a limited number of sites and that occupancy of
these sites is linearly coupled to the clinical response, then the
aqueous EC50 concentration will approximate the
Kd, which, for most inhalational anesthetics, is
between 200 and 300 µM (Franks and Lieb, 1993
). Using
this approximate Kd, and assuming that the
forward rate constant (k1) is diffusion-limited
(limited only by the time required to have reactants collide through
diffusion, which for a protein and small ligand is
~109 M
1·sec
1), we
calculate a dissociation rate constant
(k
1) of ~0.25 to 1.0 · 106 sec
1,
implying that binding sites are occupied for lifetimes of only 1 to 4 µsec. A comparison with more familiar high-affinity ligands like the
catecholamines or the peptide hormones (Kd
values of 2 to 10 nM; Cooper et al., 1982
), which have site
occupancies of many minutes, emphasizes how weak inhaled anesthetic
binding interactions really are. However, the improbable assumptions
associated with this simplistic analysis make such estimates only
tentative. The probability of multiple binding sites and nonlinear
coupling between occupancy and response would suggest that anesthetic
Kd values are really much higher than observed
EC50 values. This is, of course, entirely in
keeping with the behavior of other ligands, like the opioids. Fentanyl,
for example, has analgesic (Olkkola et al., 1995
) or inhibition of
intestinal motility (Magnan et al., 1982
) EC50
values in the 1 to 10 ng/ml plasma range, translating to 0.5- to 5 nM free concentrations (assuming 85% protein binding). Measured fentanyl µ-opioid receptor dissociation constants, on the
other hand, range from 7 to 400 nM (Magnan et al., 1982
;
Carroll et al., 1988
), the higher numbers (lower affinity) generally
reflecting more physiological conditions (e.g., the presence of sodium,
G proteins, and GTP). Although possibly expected in the highly
amplified G protein-coupled receptor response, a wide separation of
EC50 and Kd is also seen in
other receptor systems, like the ligand-gated ion channels. Pancuronium
produces a 50% suppression of twitch tension at a free drug
concentration of 0.3 to 0.4 µM (Shanks, 1986
), whereas
the Kd for the nicotinic acetylcholine receptor (nAChR) has been reported to be ~60 µM (Loiacono et
al., 1993
). In addition, whereas a 10 nM free concentration
of diazepam is anxiolytic (Greenblatt et al., 1980
), the
Kd of this ligand for the gamma-aminobutyric
acidA (GABAA) receptor is
estimated to be at least four times that value (DeLorey and Brown,
1992
). Therefore, although Kd is often higher
than functional EC50, the magnitude is not
predictable a priori, suggesting that their match is a poor criterion
of the functional relevance of binding sites.
How can dissociation constants be determined more precisely? Because
individual rate constants are difficult to measure directly, Kd is usually estimated from equilibrium binding
studies with radiolabeled ligands (Weiland and Molinoff, 1981
). Even
this approach, however, has proven challenging for the inhalational
anesthetics because of the difficulty of separating the free from the
bound states with such rapidly dissociating volatile compounds.
Recently, however, four methods to estimate the
Kd for inhalational anesthetic-protein interactions have been reported. First, simple partitioning between the
gas phase and a solution of protein, as compared with buffer alone, can
be used to estimate the amount of anesthetic bound by the protein
(Dubois and Evers, 1992
; Dubois et al., 1993
). The separation of
specific from nonspecific binding is problematic with this approach,
however, but occasionally can be achieved by comparison with
partitioning into solutions of denatured protein. This, of course,
requires sufficient structural knowledge to ensure that the binding
domain is actually removed by the denaturing conditions. It is possible
that anesthetics bind preferentially to the denatured state of some
proteins, rendering it a very poor model of nonspecific binding.
Nevertheless, using low pH to denature bovine serum albumin (BSA) for
the estimation of nonspecific binding, isoflurane and halothane have
been reported to bind to the native pH 7 form of the protein with
Kd values of 1.4 mM and 1.3 mM, respectively (Dubois and Evers, 1992
; Dubois et al.,
1993
). Similar estimates of the halothane Kd for
binding to BSA have been obtained with
19F-nuclear magnetic resonance (NMR) (Dubois et
al., 1993
) and tryptophan fluorescence quenching (Johansson et al.,
1995a
). A slightly lower estimate of the halothane
Kd (0.4 mM) was obtained with direct photoaffinity labeling (Eckenhoff and Shuman, 1993
), probably because
of selective labeling at sites of highest affinity. Nevertheless, all
of these Kd values are well within an order of
magnitude and therefore are comparable when considering the overall
binding energetics. Consistent with our predictions, all of these
estimates for the anesthetic binding to albumin are higher than the
clinical EC50 values. Although possibly
indicating that the albumin binding domains do not accurately reflect
the character of the site(s) responsible for anesthetic action, it
bears repeated emphasis that EC50 and
Kd need only be similar if one assumes that
anesthesia is produced by interactions at few similar sites and that
occupancy is linearly coupled to the clinical effect. These assumptions are untenable, considering the widely varied targets for anesthetics reported in the literature and the rarity of linear coupling in biological systems.
The 19F-NMR measurements have also allowed an
estimation of the average lifetime (1/k
1) of an
anesthetic-albumin complex, which is 200 to 250 µsec for isoflurane,
or approximately two orders of magnitude longer than estimated above
(see Section II.A.2.) (Dubois and Evers, 1992
; Xu et al., 1996
).
Substituting this dissociation rate in Equation [2] results in very
high Kd values, in excess of 10 mM.
The problem probably lies in the use of a diffusion-controlled rate for
k1 in Equation [2]. "Diffusion-controlled"
implies that all collisions between anesthetic and protein target would
result in the bound or complexed state. However, the actual binding
site(s) on the protein surface, or the pathway to an interior binding domain, may only involve a small fraction of the protein surface area,
and, therefore, the number of collisional encounters resulting in
binding should be smaller than total collisions. Further, normal protein dynamics may limit the duration that the binding site is
exposed or available, which will also clearly have an effect on
k1. So if we now use the experimentally derived
Kd and k
1 values,
k1 can be estimated to be 3·
106
M
1·sec
1, or almost
three orders of magnitude slower than expected for a
diffusion-controlled process. It is of interest that this estimate is
comparable with the forward rate constants of 104
to 107
M
1·sec
1
observed for other ligand-receptor interactions (Eigen and Hammes, 1963
; Gutfreund, 1987
; Sklar, 1987
). Most importantly, this slower than
expected association rate is consistent with a limited number of
discrete anesthetic binding sites in soluble proteins, rather than
simple nonspecific surface (interfacial) binding (Ueda, 1991
). We will
now consider the binding event in greater detail.
B. Thermodynamics
Energetics or thermodynamics drives all chemical events, including
binding interactions and is therefore a reasonable place to begin our
consideration of anesthetic-protein interactions. Dissection of the
energetics into enthalpic or entropic components yields insight into
the forces and groups responsible for a given interaction. Building on
our previous discussion, the magnitude of the dissociation constant
(Kd) allows calculation of the Gibbs free
energy change (
Go) associated with
anesthetic binding to protein:
|
(3) |
Go for different
Kd values is fairly modest, especially when
compared with the bond energy of a typical covalent interaction (~100
kcal/mol); a ten-fold change in Kd reflects
free energy changes comparable to that produced by a single hydrogen
bond (~1.0-1.5 kcal/mol; Johansson et al., 1995b
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Dissection of the thermodynamics into entropic
(
So) and enthalpic
(
Ho) components can provide clues to the
types of interactions associated with binding (Testa et al., 1987
;
Raffa and Porreca, 1989
). This can be accomplished by analysis of
anesthetic binding at different temperatures using the integrated
Van't Hoff equation:
|
(4) |
|
(5) |
1 permits calculation of
Ho and
So
from the slope (
Ho/R) and intercept
(
So/R), respectively, assuming that the
changes in enthalpy and entropy are constant over the temperature range
examined. Although the majority of energetic data on ligand binding has
been obtained using such Van't Hoff plots, more recently,
investigators have used isothermal titration calorimetry, allowing
direct measurement of the minute change in temperature of a system when
ligand binds to protein (Jakoby et al., 1995How can such thermodynamic information be interpreted? Binding of
a hydrophobic compound to a protein target would suggest an increase in
the order of the system (a negative change in entropy), but the more
important entropic event may be the elimination of the many
"structured" water molecules surrounding the hydrophobic ligand in
aqueous solution (Muller, 1990
), a situation termed "hydrophobic
hydration." Therefore, the net entropic change associated with
binding to a target based strictly on this hydrophobic effect is
actually positive (favorable). Even further entropic advantage is
gained if the ligand binding site in the protein is normally occupied
by water molecules (also likely to be "structured"), which are
"released" by ligand binding (such as occurs when dichloroethane binds to insulin; see Section II.D.4.). Binding events based strictly on such hydrophobic events tend to be associated with little or no
enthalpic change (no change in heat content) unless there are also some
weak electrostatic interactions involved (e.g., van der Waals and/or
hydrogen bonding; see Section II.C.2.). These weak attractive forces
between ligand and target will improve the stability of the complex
(negative free energy change) and decrease the enthalpy (i.e., decrease
the heat content, an exothermic process). Typical ligand-receptor
interactions are very stable, being dominated by large enthalpic
components; anesthetic-protein interactions are thought to be less
stable, with small
H° values.
Thermodynamic analyses of anesthetic-protein interactions have, to
date, been limited to only a few systems, most of these being the
simpler soluble proteins. The Overton-Meyer relationship would
emphasize the importance of hydrophobic interactions, suggesting that
entropic contributions dominate. However, using a light-emitting enzyme
purified from fireflies, Dickinson and colleagues (1993)
reported that
the interaction between inhalational anesthetics and firefly luciferase
was also characterized by a negative enthalpy at 20°C, showing that
heat was released when anesthetics bind to this protein and was
consistent with some electrostatic attraction between target and
anesthetic. This is in accord with earlier work by Ueda and Kamaya
(1973)
, and, as suggested above, implies that anesthetic binding events
are more complex than simple hydrophobic partitioning, at least in
these soluble proteins.
Other anesthetic/soluble protein interactions that have been examined
energetically include those with albumin, myoglobin, and lysozyme. We
have used tryptophan fluorescence quenching to examine the temperature
dependence of halothane binding to BSA and have found that the apparent
Kd decreases as the temperature is reduced,
giving the Van't Hoff plot shown in figure
1. This analysis yields a
Ho of
1.9
kcal·mol
1 and a
S° of +6.0
cal·mol
1·K
1,
quantitatively similar to the values for the halothane-luciferase interaction (Dickinson et al., 1993
). Recently, Ueda and Yamanaka (1997)
also reported that chloroform binding to BSA is associated with
a negative enthalpy change (
Ho =
2.5
kcal/mol
1). Similarly, the binding of
benzene in a hydrophobic cavity of a T4 lysozyme variant is also
primarily an enthalpic process (Eriksson et al., 1992a
; Morton et al.,
1995
). Even xenon binding to myoglobin (Ewing and Maestas, 1970
) has
been shown to be enthalpy-driven, with a
Go of
2.9 kcal
mol
1 at 25°C. Thus, protein-anesthetic
interactions can be characterized by a negative enthalpic change,
implying weak electrostatic attractions in addition to the hydrophobic
effect, but the relevance of this characteristic to anesthetic action
must wait for more studies like these of many different protein
systems, including the important membrane proteins.
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The energetics of anesthetic binding to membrane-bound protein could be
very different, because the target itself is partitioned between two
solvents: water and lipid. Few data exist. In the erythrocyte
Ca2+-adenosine triphosphatase (ATPase),
inhalational anesthetics inhibit activity less (higher
IC50) at 25°C as compared with
physiological temperature, indicating a more positive
Ho than found in anesthetic interactions
with the soluble proteins mentioned above (Kosk-Kosicka, 1994
). This is
more consistent with the classical view of the hydrophobic effect and
may reflect a greater role of hydrophobicity and a lesser role of
electrostatic interactions in anesthetic binding to membrane proteins.
Such energetic data could be interpreted as pointing toward the
lipid-protein interface, or the lipid bilayer itself, as the relevant
functional binding domain in these proteins. Although consistent with
studies attempting to localize the inhalational anesthetic binding
sites in membrane proteins (see Section II.D.3.) it clearly points
toward the need for more work on the thermal dependence of anesthetic effects in membrane systems.
C. Binding Forces
1. The hydrophobic effect.
Although presented above (See
Section II.B.), the hydrophobic effect is a topic of some confusion, so
we will discuss it in a little more depth here. The hydrophobic effect
is classically thought to result from the attraction of water molecules
for each other and the energetic cost of creating a cavity between
these strongly hydrogen-bonded molecules to accommodate the hydrophobic molecule (Tanford, 1973
; Ben-Naim, 1980
). Although this energetic cost
can be overcome by the strong electrostatic attraction between charged
species (like ions) and the relatively high partial charges of water,
the weakly polar anesthetic molecules have only feeble interactions
with water and are therefore forced or squeezed into macromolecular
domains of low hydration when available (e.g., hydrophobic regions),
returning the more structured water lining the cavity to its more
disordered state. This movement of the anesthetic from bulk water into
a hydrophobic domain is therefore a favorable entropic event,
consistent with a multitude of partitioning studies between organic
solvents and water at 25°C (Tanford, 1973
; Ben-Naim, 1980
; Abraham et
al., 1990
).
-helices (Johansson and
Eckenhoff, 1996
; fig. 2).
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repressor, where site-directed mutations produced an increase in
packing density and thermodynamic stability, but a decrease in function (Lim et al., 19942. Electrostatic interactions.
The original Overton-Meyer
correlation of anesthetic potency with lipid solubility was based on
olive oil, an inconsistent mixture of various lipids (Hazzard et al.,
1985
; Halsey, 1992
). A somewhat better correlation has been found for
n-octanol than for strictly aliphatic solvents (Franks and
Lieb, 1978
), implying the importance of a polar component at the
anesthetic site of action. A further improvement of the correlation is
achieved with lecithin, strengthening the hypothesis that the
anesthetic site(s) of action have polar and amphipathic features that
interact with anesthetic molecules (Taheri et al., 1991
; Halsey, 1992
).
Despite the fact that inhaled anesthetics are themselves formally
uncharged, such interactions are electrostatic in nature. Weak
electrostatic interactions can be conveniently (but not distinctly)
divided into hydrogen bonding and van der Waals (or dispersion)
interactions. We will also consider stereoselectivity here, because the
spatial distribution of electrostatic interactions within a cavity is likely to be the basis for differential binding selectivity for enantiomers.
-electrons of aromatic
rings (Levitt and Perutz, 1988
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6, rendering
these forces significant only at very close range. However, once
proximity reaches the sum of their van der Waals radii, a strong
repulsive force replaces the attraction between two atoms (Gray, 1994
) isomer (Harris et al., 1992aD. Location and Character of Anesthetic Protein Binding Sites
We have primarily discussed the forces governing the binding interaction, which, as we have seen, begin to define the character of the binding sites themselves. We have predicted, for example, that the binding sites are hydrophobic with some polar character and whose features are sufficiently general to be widespread. These predictions can be tested and our concepts of the forces involved refined through the actual determination and characterization of anesthetic binding sites in protein. Further, and perhaps most importantly, localization of protein binding sites may provide clues for the structural/dynamic consequences of binding. Such location and structural information can be provided by a number of different approaches, from kinetic studies to X-ray crystallography. We have organized this section by experimental approach, because it is a convenient way to cover the available data, and it is important to realize the individual strengths and limitations of each method for characterizing binding sites.
1. Functional and equilibrium binding assays.
The most common
approach found in the literature is to examine whether the anesthetic
binding site overlaps with a native substrate or ligand site. This
information may be provided by determining the concentration dependence
of the anesthetic effect on some functional assay or an equilibrium
(radioligand) binding assay for a previously established ligand. Double
reciprocal plots allow the interaction to be classified as competitive,
noncompetitive, or some combination of the two. Competitive kinetics
are usually interpreted as anesthetic binding at the same site or at an
overlapping site in the protein as the ligand. There are numerous
examples of this approach, ranging from soluble proteins, such as
adenylate kinase (Sachsenheimer et al., 1977
), firefly and bacterial
luciferases (Adey et al., 1975
; Franks and Lieb, 1984
), to membrane
bound proteins, such as the ligand-gated ion channels or catecholamine transporters (El-Maghrabi and Eckenhoff, 1993
; Moody et al., 1993
). In
firefly luciferase, for instance, the double-reciprocal plot indicates
competition with the native substrate luciferin and further suggests
that two halothane molecules fit in the luciferin binding site on the
protein (Franks and Lieb, 1984
), consistent with the approximate
molecular volumes of these two ligands.
2. Spectroscopic approaches. A powerful series of methods for determining the location of anesthetic binding sites, and one to which we will return when considering alterations in protein structure, is spectroscopy of specific reporter groups on the protein target or the anesthetic itself. These reporter groups typically provide information on the character of their immediate environment, which is expected to change with the addition of an anesthetic molecule. However, it bears emphasis that anesthetic-induced changes in this environment might also result from structural or electronic transitions mediated through occupancy of distant sites. As with the functional assay, other methods are necessary to confirm the location of the anesthetic interaction or to verify the absence of more global structural/electronic effects in the protein.
a. 19F-Nuclear magnetic resonance spectroscopy. The volatile general anesthetics that are currently in clinical use (e.g., halothane, isoflurane, and desflurane) are heavily fluorinated to decrease metabolism and flammability. Because fluorine is present in biological systems in negligible amounts, the naturally occurring 19F isotope on the anesthetic can be studied with NMR spectroscopy with little background noise (Wyrwicz, 1991
12 seconds). Also, as mentioned above (see Section
II.D.1.), it should be realized that alterations in the structure of a
protein by binding of the anesthetic at a remote site could change the environment of a tryptophan residue sufficiently to produce, for example, charge transfer interactions with neighboring residues that
quench the fluorescence signal. Such local alterations in the nAChR
conformation may be responsible for the recently reported anesthetic-induced changes in the kinetics of the fluorescence enhancement following the binding of an acetylcholine analog (Raines et
al., 1995
-C
bond can be quantified using anisotropic measurements; a decrease in anisotropy reflects an increase in probe
mobility (the free, unbound fluorophore would have no anisotropy), whereas an increase in anisotropy reflects restricted mobility of the
fluorophore. Because anesthetic-protein interactions may have both
local and global dynamic consequences, this approach may be a useful
means of measurement. Accordingly, Vanderkooi and colleagues (1977)
1. This part of
the electromagnetic spectrum consists of low-energy photons that are
ideal for probing the weak interactions thought to be of importance to
anesthetic-macromolecule interactions. Infrared radiation is absorbed
by the bending and stretching vibrations of various functional groups,
resulting in a complex absorption spectrum. This form of spectroscopy
has the advantage of rapid time resolution (10
12
seconds), allowing discrimination of environments and events not
possible with conventional NMR approaches. Caughey and coworkers have used infrared spectroscopy to characterize
the binding environment of nitrous oxide in a variety of protein
targets. They examined the shift in the wavenumber position of a
specific antisymmetric stretch frequency (
3) of N2O close to 2230 cm
1, which reflects the
polarity of the environment of the anesthetic molecule (Gorga et al.,
1985
1 suggested subtle tertiary structural alterations
in the protein (Dong et al., 19943. Direct photoaffinity labeling.
A recent approach developed
in our laboratory is halothane direct photoaffinity labeling (Eckenhoff
and Shuman, 1993
; El-Maghrabi et al., 1992
). As previously discussed
(see Section II.A.), the rapid kinetics of halothane equilibrium
binding preclude or complicate the use of several conventional methods
for determining binding location. These rapid kinetics, however, can be
converted to a stable covalent bond by cleaving the carbon-bromine bond
of halothane with ultraviolet light to produce a reactive
chlorotrifluoroethyl radical, which then covalently attaches to
residues in its equilibrium-bound environment to form an adduct,
probably through a two-step reaction process, should a suitable group
be immediately available. If not, as in the case of halothane
photolysis in water, the radical prefers to recombine with the free
bromine atom, reforming the parent halothane molecule. An ability to
recombine with the bromine atom makes it likely that sites of higher
affinity will be preferentially labeled over those of lower affinity.
After covalent linkage, the adduct location can be identified by
including a radioactive atom, such as 14C on the
trifluoromethyl carbon, or 3H on the 1-carbon, or
by monitoring regional protein mass with mass spectrometry (Lindeman
and Lovins, 1976
; Grenot et al., 1994
). Importantly, photoaffinity
labeling is one of the few methods available for these small anesthetic
ligands capable of separating specific from nonspecific binding,
because unlabeled halothane can be used as a competitor. Accordingly,
most halothane labeling of biological membranes was found to be
specific, whereas labeling of the lipid portion alone (liposomes) was
substantially less inhibited by unlabeled halothane (Eckenhoff, 1996b
).
Photolabeling has also permitted the mapping of halothane binding sites
in soluble proteins, such as serum albumin. Two specific binding sites
were identified in BSA (Eckenhoff, 1996a
), and these correspond roughly to the location of the two tryptophans in this protein, in agreement with the tryptophan quenching studies (Johansson et al., 1995a
). In
accordance with the rapid kinetics and relatively small size of the
parent molecule, halothane, the label is found bound to several amino
acid residues in the large IIA cavity (Trp214-Arg219). Further,
despite clear competition between fatty acids and halothane (Dubois and
Evers, 1992
; Eckenhoff and Shuman, 1993
) for binding to BSA, the
photolabeled residues do not coincide with the presumed fatty acid
binding domains (Carter and Ho, 1994
), indicating allosteric communication between these sites. This is consistent with the global
conformational changes that albumin undergoes on binding fatty acids
(Carter and Ho, 1994
) and the large increase in thermal stability
(Shrake and Ross, 1988
). Also, t