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Vol. 50, Issue 2, 271-278, June 1998
Glaxo Institute of Applied Pharmacology, Department of Pharmacology (P.P.A.H.), University of Cambridge, Cambridge, England and Molecular Neurobiology Unit, Division of Basic Medical Sciences (E.A.B.), Royal Free Hospital School of Medicine, London, England
I. Rationale for a Receptor Code
II. Criteria for Receptor Characterization
III. Proposal for a Systematic Receptor Code
IV. Conclusions
Acknowledgments
References
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I. Rationale for a Receptor Code |
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A generally accepted system for defining, characterizing, and
classifying transmitter/hormone receptors is desirable for several reasons. First, pharmacologists need a common language so that ambiguity is not created by varied and inconsistent terminologies. It
is estimated that a significant fraction of the mammalian genome codes
for receptor proteins and subunits; this leads to the prediction of
several thousands of individual signal-transducing receptors, even
without consideration of the very large group of olfactory and
gustatory receptors that exists (see Glusman et al., 1996
). Thus, an internationally acceptable classification system for receptors
is both desirable and necessary. Second, the development of a
systematic scheme of classification is in itself an important generic
research approach in biological science. It can bring focus, highlight
relationships, and stimulate the recognition and investigation of
features common to various classes and groups. It also can indicate
deficiencies in our information and add an evolutionary perspective,
which may bring its own insights. It remains to be determined why there
is, in many cases, such a large variety of receptors for a given
chemical messenger transmitter. We need to determine whether all these
receptors are functional. It is also interesting to consider how they
evolved and how many more endogenous ligands, known and unknown, are to
be anticipated. Third, drug discovery benefits greatly from the
systematic analysis of the growing body of information on receptors and
their subclassification, with the knowledge that each receptor subtype
provides a potential new drug target. Thus, it is now well recognized
that the identification of well defined receptor subtypes often leads
to highly specific drugs with new clinical indications and/or less
undesirable side effects. It is reasonable to assume that future
computer-based analyses or predictions of drug selectivities will
benefit greatly from an established universal framework of a systematic
receptor classification.
The term "receptor" is in use in various broad senses, but for
pharmacological purposes the term is used specifically (Barnard, 1997
;
Humphrey, 1997
) and refers to proteins which are "signal transducing
receptors," as defined and discussed by Kenakin et al.
(1992)
. That is, each such protein specifically recognizes and is
activated by a native agonist, which is one of numerous different
messenger molecules that specifically relay a signal into a cell or
between compartments within a cell. Thus, receptors in the
pharmacological sense may be in one of three locations: (a)
in the plasma membrane (the receptors for neurotransmitters, trophins,
growth factors, and cytokines, other immunomediators, morphogens,
sensory stimulants, and chemoattractants, and circulating hormones);
(b) in an organelle membrane (e.g., those receptors where
the transduction process involves the release of
Ca2+ from an intracellular store); (c)
in the cytosol. Case c can involve migration of the ligand-bound
receptor to the cell nucleus, as for the receptors that belong to the
superfamily of ligand-regulated transcription factors, whose ligands
are steroid hormones and certain other fat-soluble hormones (structural
class 4 here; see below). For all the natural signal-transducing
agonists involved, the general term "transmitter" can be used.
As a consequence of the considerations listed above, much effort has
been dedicated recently to the classification of the pharmacologically
better-known neurotransmitter receptors. However, molecular biology has
created a dramatic increase in information on the existence and
structure of receptors, often preceding any data on their function,
thereby reversing the traditional order of pharmacological data
acquisition. The IUPHAR Committee on Receptor Nomenclature and Drug
Classification (NC-IUPHAR), with its various Subcommittees,b has been
constituted to review current approaches to receptor characterization
and to define a generic scheme of nomenclature (Vanhoutte et
al., 1994
, 1996
; Humphrey et al., 1994
). Although progress has been made in standardizing trivial names in several receptor areas (and this initiative will continue), it is suggested that an all-embracing, rational system of coding receptors should be
introduced [an alphanumeric receptor code
(RC)c], analogous to the EC
(Enzyme Commission) enzyme codes introduced by the International Union
of Biochemistry and Molecular Biology (IUBMB). It will differ from the
EC system (which was set up before the era of molecular biology) in
that the proposed codes are intended to convey structural information
(relevant to the mode of receptor transduction) together with
additional elements relating to operational characteristics, set out in
a hierarchical order. This should provide a unique, unambiguous,
and authoritative descriptor for each receptor protein. Each RC,
assigned by NC-IUPHAR, is intended to be used in publications for
definitive identification, in conjunction with a suitable (ideally,
approved) trivial name. It also will be used in The IUPHAR
Compendium of Receptor Characterization and Classification
(July 1998), together with the planned IUPHAR Receptor
Database which will link uniquely nucleotide and protein databases
to comprehensive data on receptor function and drug-related operational
characteristics (recognition and transduction).
The details presented here constitute a proposal, sanctioned by NC-IUPHAR (see acknowledgment), which provides a basis for a broad and full debate within the pharmacological community at large and with scientists from other disciplines and their representative bodies.
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II. Criteria for Receptor Characterization |
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It generally is acknowledged that studies toward the
pharmacological characterization and classification of
neurotransmitter/hormone/autacoid receptors should involve work on both
function and structure (e.g., see Humphrey et al., 1993
,
1994
; Vanhoutte et al., 1994
; Hoyer et al., 1994
;
Humphrey, 1997
). Receptor structure, in terms of its amino acid
sequence, is unambiguous and will allow the allocation of a database
code to the unequivocally identified protein. Function is equally
important and not necessarily sufficiently predictable from structure,
although it may be. Thus, one amino acid difference may make important
differences in the drug recognition characteristics of a receptor (cf.,
the rat and human neurokinin NK1 receptors) or by
contrast significant differences in receptor sequence homology may make
little such difference (e.g., in human 5-HT1B and
5-HT1D receptors or somatostatin receptors
sst1 and sst4) (see Sachais et al., 1993
; Hoyer et al., 1994
, 1995
). It is
therefore essential to establish which drugs are specific and selective
for a particular receptor, either as agonists or antagonists, and to
provide appropriate quantitative measurements of key parameters (see
Kenakin et al., 1992
; Jenkinson et al., 1995
).
The affinities (as dissociation equilibrium constants) of ligands often
are measured from radioligand binding studies, and such data (at least
for antagonists) should be equivalent to the corresponding data from
functional studies. It has been argued that parameters from both types
of studies clearly cannot be considered on semantic grounds under the
umbrella term "functional" and hence the term "operational" has
been introduced (Humphrey et al., 1994
; Humphrey, 1997
).
Doubts about the use of "operational" in this context have been
expressed because of its prior (and currently accepted) use in
reference to agonism and agonist-specific parameters, which involve an
efficacy component with more than just a binding (and recognition)
parameter being involved (Kenakin et al., 1992
; Black and
Leff, 1983
). However, this strengthens the argument for using the term
"operation" which, importantly, implies an added involvement of
receptor "activation" and hence transduction. The alternative term
"recognition" more specifically refers to the binding
characteristics or binding affinities of drugs (both agonist and
antagonist) for a given receptor but does not necessarily encompass all
aspects of receptor function, as the term "operational" undoubtedly
does.
Transduction in the context of receptor characterization is intended to
refer to the steps that allow the binding of an agonist at the receptor
to be linked to the transmission of a signal into a cell or between
compartments of a cell. This necessarily will involve specific changes
in the receptor protein (if it is in the ion-channel class) or, in
other cases, relayed to associated proteins which execute the primary
signaling step. Transductional data should not involve the
categorization of more downstream second-message cascades themselves,
although such information might be used judiciously to infer events
upstream. Even if more tightly defined, the use of transductional data
to characterize receptors is controversial but it has been invaluable
nevertheless in the classification of 5-HT receptors (Humphrey et
al., 1993
; Hoyer et al., 1994
). Thus
5-HT1C (now called 5-HT2C)
and 5-HT2 (now called
5-HT2A) receptors were predicted to belong to the same receptor group on the basis of shared transduction mechanisms. This was confirmed later when both receptor genes were cloned and the
respective proteins were shown to share a high degree of homology
(Hoyer et al., 1994
). In contrast, although both
5-HT3 and 5-HT4 receptor
types can be blocked by tropisetron (albeit at different
concentrations), it was obvious on the basis of transduction that the
two receptors were quite distinct even before both genes had been
cloned (Humphrey et al., 1993
; Hoyer et al.,
1994
). Thus, at the very least, consideration of the transduction
mechanism involved will distinguish between a ligand-gated ion channel
receptor and a G protein-coupled receptor (i.e., the
5-HT3 and 5-HT4 receptor, respectively). It should be noted that the structural classes proposed
here reflect known fundamentally different transduction mechanisms for
each. It follows that a knowledge of receptor transduction mechanisms
from functional studies is important but how much value should be
attached to such operational data specifically for receptor characterization purposes in isolation remains to be determined. However, there is a growing view that the unique intracellular face of
each membrane-bound receptor protein will dictate preferred stoichiometric interactions with adjacent proteins, which will be
characteristic of the receptor type involved. On the basis of these
arguments, essential operational data for receptor characterization would include all drug recognition and drug interaction data, from both
functional as well as radioligand binding studies, together with data
on receptor transduction mechanisms directly related to receptor
activation.
In summary, we propose that the pharmacological criteria for receptor characterization will depend on the integration of data from studies on both receptor structure and receptor operation. When such an integrated pharmacological profile is detailed sufficiently it will be possible to register an IUPHAR RC with confidence.
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III. Proposal for a Systematic Receptor Code |
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A systematic numbering system for all known pharmacological receptors allows definitive labeling of a particular receptor by an international pharmacological authority (NC-IUPHAR), while providing valuable classified information about its characteristics. Each RC would provide a unique identifier for each receptor within The NC-IUPHAR Receptor Database, which contains extensive pharmacological information on receptor characterization and classification. This would be analogous to the EC numbering system used for enzymes. If necessary such codes could be changed when new information and understanding dictated that change was essential. A full alphanumeric code could provide a universally accessible record of numbering and subclassification of receptors which would reflect the state of current knowledge for the structure and characteristics of each receptor. The coding system would not replace trivial names, which usually would be used, but it would circumvent some of the problems associated with attempts to standardize such trivial names.
The proposed RC would consist of a set of divisions, separated from each other by full points; each division conveys a different category of information about the receptor, as summarized in table 1. Thus, according to the system proposed, the rat 5-HT1A receptor (as a G protein-coupled recombinant receptor for 5-HT, classified pharmacologically as the 1A subtype) would have a RC of 2.1.5HT.1A.RNO.00.00 and the human 5-HT3 (as the first ligand-gated cation channel receptor subunit for 5-HT) would have an RC of 1.1.5HT.01.HSA.00.00.S. Other examples to illustrate the coding system are the rat muscarinic acetylcholine receptor (2.1.ACH.M1.RNO.00.00) and the human P2X1 receptor subunit (1.4.NUCT.01.HSA.00.00.S). These RCs are based on the assignment of the coded information explained in this document. (See tables 2-8.)
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An RC will be reserved for the polypeptide product(s) of a single orthologous gene. Species variants will share a common RC but will be differentiated by a three-letter species code (see tables 9 and 10). A provisional RC can be assigned without cloning of the relevant gene providing it has been characterized robustly in whole tissues (e.g., histamine H3 receptor). This may prove difficult in the brain, or in other tissues if multiple subtypes co-occur. Where this is so, the minimum requirement for a recombinant receptor to be accepted as a functional entity will be that robust operational (which must include transductional) data are provided for the heterologously expressed receptor and that its messenger ribonucleic acid, or the protein itself, is shown to occur in vivo. Recombinant receptors which have not been shown to be functional in whole tissues (e.g., 5-ht5b) would be assigned only a provisional RC code number designated by a terminal upper case "P" (e.g., 2.1.5HT.05B.RNO.00.00.P).
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For structural classes in which hetero-oligomeric receptors occur, RCs for individual subunits often will be represented instead of the entire multimeric receptor, because the composition of the latter is usually indeterminate at present. Subunit RCs will be indicated by a terminal upper case "S" [e.g., 1.4.NUCT.01.00.00.S in the case of the P2X1 receptor subunit for adenosine triphosphate (ATP)]. Where the subunit composition of an endogenous heteromeric receptor becomes known, that receptor is represented by a unique RC of its own (indicated by a terminal upper case "M" to represent a "multimeric" receptor); its subunit composition would be indicated in the database by listing the component RCs (S), and their stoichiometry when definitely known. For many transmitter-gated ion-channel receptors in Class 1, where a subunit combinatorial system occurs, the exact stoichiometry is not known currently. However, the situation is less complex for hetero-oligomers occurring in Class 3 where there is usually a fixed composition of subunits for each receptor type.
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IV. Conclusions |
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We have provided justification for a systematic method of coding
receptors of all structural types. The RC system proposed is designed
not just to be informative but also to provide a distinct alphanumeric
descriptor for each receptor protein. It is intended that each
individual RC will not only define each receptor type unambiguously by
way of a simple reference for publication purposes, but that it will
also associate automatically with a large body of information in an
authoritative pharmacological database. This database would supply an
urgent need of pharmacologists and other scientists interested in the
correlation and integration of data on receptor operation with that on
receptor structure. The IUPHAR Receptor Database
will link not only with existing databases already established for gene
nucleotide sequences and amino acid sequences of receptor proteins, but
will also uniquely provide detailed pharmacological data on the
characteristics of receptor recognition and transduction. The latter
data will be approved by international panels of experts in each of the
many existing and future NC-IUPHAR subcommittees established for the
different receptor families (see Vanhoutte et al., 1994
).
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Acknowledgments |
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We wish to acknowledge the members of NC-IUPHAR and the Technical Subcommittee for their contributions to the debate which led to the development of these ideas. The memberships of the committees are listed in footnote b, page 272. IUPHAR is grateful to UNESCO for financial support toward the work of the NC-IUPHAR.
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Footnotes |
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a Address for Correspondence: P.P.A. Humphrey, Glaxo Institute of Applied Pharmacology, Department of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QJ, England.
b Composition of the IUPHAR Committee on Receptor Nomenclature and Drug Classification: E.A. Barnard, T.I. Bonner, W.C. Bowman, P.B. Bradley, B.N. Dhawan, C.T. Dollery, B.B. Fredholm, C.R. Ganellin, T.P. Godfraind, M. Hamon, T.K. Harden, P.P.A. Humphrey, S.Z. Langer, T. Masaki, R. Paoletti, R.R. Ruffolo, M. Spedding, U.G. Trendelenburg, P.M. Vanhoutte, S.P. Watson. Technical subcommittee (and corresponding members): E.A. Barnard, T.I. Bonner, D. Hoyer, P.P.A. Humphrey, P. Leff, J. Lomasney, N.P. Shankley, D.H. Jenkinson, S.P. Watson (and R.B. Barlow, J.W. Black, D.E. Clarke, D. Colquhoun, R.F. Furchgott, J.P. Green, T.P. Kenakin, R.J. Lefkowitz, D.R. Waud).
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Abbreviations |
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ATP, adenosine triphosphate; CFTR, cystic fibrosis transmembrane regulator; EAA, excitatory amino acid; EC, Enzyme Commission; FMRF, Phe-Met-Arg-Phe amide; JAK, Janus kinase; Kir, inward rectifier potassium channel; NC-IUPHAR, IUPHAR Committee on Receptor Nomenclature and Drug Classification; RC, receptor code; Trk, a tyrosine kinase subunit of neurotrophin receptors. The other abbreviations used are defined in table 7 .
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References |
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Recommendations on terms and symbols in quantitative pharmacology.
Pharmacol Rev
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255-266[Medline].
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Cell
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1113-1124[Medline].
0031-6997/98/502-0271$03.00/0
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