Skip to main content

Alternative Pre-mRNA Splicing and Neuronal Function

  • Chapter

Part of the book series: Progress in Molecular and Subcellular Biology ((PMSB,volume 31))

Abstract

The protein output of a gene is often regulated by splicing the primary RNA transcript into multiple mRNAs that differ in their coding exon sequences. These alternative splicing patterns are found in all kinds of genes and tissues. However, in the nervous system, proteins involved in two processes show particularly high levels of molecular diversity created by alternative splicing. These are proteins that determine the formation of neuronal connections during development and proteins that mediate cell excitation. Although some systems of splicing are highly complex, work on simpler model systems has started to identify the molecular components that determine these splicing switches. This review describes how alternative splicing is central to the control of neuronal function, and what is currently known about its mechanisms of regulation. How errors in splicing might contribute to diseases of the nervous system is also discussed.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   129.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Adams MD, Tarng RS, Rio DC (1997) The alternative splicing factor PSI regulates P-element third intron splicing in vivo. Genes Dev 11: 129–138

    PubMed  CAS  Google Scholar 

  • Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF et al. (2000) The genome sequence of Drosophila melanogaster. Science 287: 2185–2195

    PubMed  Google Scholar 

  • Alwazzan M, Newman E, Hamshere MG, Brook JD (1999) Myotonic dystrophy is associated with a reduced level of RNA from the DMWD allele adjacent to the expanded repeat. Hum Mol Genet 8: 1491–1497

    PubMed  CAS  Google Scholar 

  • Angers A, DesGroseillers L (1998) Alternative splicing and genomic organization of the L5–67 gene of Aplysia californica. Gene 208: 271–277

    PubMed  CAS  Google Scholar 

  • Antic D, Keene JD (1997) Embryonic lethal abnormal visual RNA-binding proteins involved in growth, differentiation, and posttranscriptional gene expression. Am J Hum Genet 61: 273278

    Google Scholar 

  • Antic D, Lu N, Keene JD (1999) ELAV tumor antigen, Hel-N1, increases translation of neurofilament M mRNA and induces formation of neurites in human teratocarcinoma cells. Genes Dev 13: 449–461

    PubMed  CAS  Google Scholar 

  • Ashiya M, Grabowski PJ (1997) A neuron-specific splicing switch mediated by an array of premRNA repressor sites: evidence of a regulatory role for the polypyrimidine tract binding protein and a brain-specific PTB counterpart. Rna 3: 996–1015

    PubMed  CAS  Google Scholar 

  • Beam K (1999) Calcium channel splicing: mind your Ps and Qs, Nat Neurosci 2: 393–394

    PubMed  CAS  Google Scholar 

  • Beil B, Screaton G, Stamm S (1997) Molecular cloning of htra2-beta-1 and htra2-beta-2, two human homologs of tra-2 generated by alternative splicing. DNA Cell Biol 16: 679–690

    PubMed  CAS  Google Scholar 

  • Benjamin PR, Burke JF (1994) Alternative mRNA splicing of the FMRFamide gene and its role in neuropeptidergic signalling in a defined neural network. Bioessays 16: 335–342

    PubMed  CAS  Google Scholar 

  • Berget SM (1995) Exon recognition in vertebrate splicing. J Biol Chem 270: 2411–2414

    PubMed  CAS  Google Scholar 

  • Bergsdorf C, Paliga K, Kreger S, Masters CL, Bayreuther K (2000) Identification of cis-elements regulating exon 15 splicing of the amyloid precursor protein pre-mRNA. J Biol Chem 275: 2046–2056

    PubMed  CAS  Google Scholar 

  • Berke JD, Sgambato V, Zhu P, Lavoie B, Vincent M, Krause M, Hyman SE (2001) Dopamine and glutamate induce distinct striatal splice forms of ania-6, an RNA polymerase II-associated cyclin. Neuron 32: 277–287

    PubMed  CAS  Google Scholar 

  • Black DL (1991) Does steric interference between splice sites block the splicing of a short c-src neuron-specific exon in nonneuronal cells? Genes Dev 5: 389–402

    PubMed  CAS  Google Scholar 

  • Black DL (1992) Activation of c-src neuron-specific splicing by an unusual RNA element in vivo and in vitro. Cell 69: 795–807

    PubMed  CAS  Google Scholar 

  • Black DL (1998) Splicing in the inner ear: a familiar tune, but what are the instruments? Neuron 20: 165–168

    PubMed  CAS  Google Scholar 

  • Black DL (2000) Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology. Cell 103: 367–370

    PubMed  CAS  Google Scholar 

  • Bourinet E, Soong TW, Sutton K, Slaymaker S, Mathews E, Monteil A, Zamponi GW, Nargeot J, Snutch TP (1999) Splicing of alpha 1 A subunit gene generates phenotypic variants of P- and Q-type calcium channels. Nat Neurosci 2: 407–415

    PubMed  CAS  Google Scholar 

  • Bowe MA, Fallon JR (1995) The role of agrin in synapse formation,Annu Rev Neurosci 18: 443–462

    CAS  Google Scholar 

  • Brudno M, Gelfand MS, Spengler S, Zorn M, Dubchak I, Conboy JG (2001) Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing. Nucleic Acids Res 29: 2338–2348

    PubMed  CAS  Google Scholar 

  • Buchanovich RJaDRB (1997) The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo. Mol Cell Biol 17: 3194–3201

    Google Scholar 

  • Buck LB, Bigelow JM, Axel R (1987) Alternative splicing in individual Aplysia neurons generates neuropeptide diversity. Cell 51: 127–133

    PubMed  CAS  Google Scholar 

  • Burge CB, Tuschl T, Sharp, PA (1999) Splicing of precursors to mRNAs by the spliceosomes. In: Gesteland RF, Cech TR, Atkins JF (eds) The RNA world, 2nd edn. Cold Spring Harbor Laboratory Press, New York, pp 525–560

    Google Scholar 

  • Burgess RW, Nguyen QT, Son YJ, Lichtman JW, Sanes JR (1999) Alternatively spliced isoforms of nerve and muscle derived agrin: their roles at the neuromuscular junction. Neuron 23: 33–44

    PubMed  CAS  Google Scholar 

  • Burke JF, Bright KE, Kellett E, Benjamin PR, Saunders SE (1992) Alternative mRNA splicing in the nervous system. Prog Brain Res 92: 115–125

    PubMed  CAS  Google Scholar 

  • Caceres JF, Stamm S, Helfman DM, Krainer AR (1994) Regulation of alternative splicing in vivo by overexpression of antagonistic splicing factors. Science 265: 1706–1709

    PubMed  CAS  Google Scholar 

  • Campanelli JT, Gayer GG, Scheller RH (1996) Alternative RNA splicing that determines agrinactivity regulates binding to heparin and alpha-dystroglycan. Development 122: 1663–1672

    PubMed  CAS  Google Scholar 

  • Caputi M, Mayeda A, Krainer AR, Zahler AM (1999) hnRNP A/B proteins are required for inhibition of HIV-1 pre-mRNA splicing. EMBO J 18: 4060–4067

    Google Scholar 

  • Carlo T, Sterner DA, Berget SM (1996) An intron splicing enhancer containing a G-rich repeat facilitates inclusion of a vertebrate micro-exon. Rna 2: 342–353

    PubMed  CAS  Google Scholar 

  • Carlo T, Sierra R, Berget SM (2000) A 5’ splice site-proximal enhancer binds SF1 and activates exon bridging of a microexon. Mol Cell Bio120: 3988–3995

    Google Scholar 

  • Chabot B, Blanchette M, Lapierre I, La Branche H (1997) An intron element modulating 5’ splice site selection in the hnRNP Al pre-mRNA interacts with hnRNP Al. Mol Cell Biol 17: 1776–1786

    PubMed  CAS  Google Scholar 

  • Chalfant CE, Mischak H, Watson JE, Winkler BC, Goodnight J, Farese RV, Cooper DR (1995) Regulation of alternative splicing of protein kinase C beta by insulin. J Biol Chem 270: 13326–13332

    PubMed  CAS  Google Scholar 

  • Chan RC, Black DL (1995) Conserved intron elements repress splicing of a neuron-specific c-src exon in vitro. Mol Cell Biol 15:6377–6385 [published erratum appears in Mol Cell Biol 1997; 17 (5): 2970 ]

    Google Scholar 

  • Chan RC, Black DL (1997) The polypyrimidine tract binding protein binds upstream of neural cell-specific c-src exon Ni to repress the splicing of the intron downstream. Mol Cell Biol 17: 4667–4676

    PubMed  CAS  Google Scholar 

  • Chen CD, Kobayashi R, Helfman DM (1999) Binding of hnRNP H to an exonic splicing silencer is involved in the regulation of alternative splicing of the rat beta-tropomyosin gene. Genes Dev 13: 593–606

    PubMed  CAS  Google Scholar 

  • Chong JA ea (1995) REST: a mammalian silencer protein that restricts sodium channel gene expression to neurons. Cell 80: 949–957

    Google Scholar 

  • Chou MY, Rooke N, Turck CW, Black DL (1999) hnRNP H is a component of a splicing enhancer complex that activates a c-src alternative exon in neuronal cells. Mol Cell Biol 19: 69–77

    Google Scholar 

  • Chou MY, Underwood JG, Nikolic J, Luu MH, Black DL (2000) Multisite RNA binding and release of polypyrimidine tract binding protein during the regulation of c-src neural-specific splicing. Mol Cell 5: 949–957

    PubMed  CAS  Google Scholar 

  • Chung SL, Jiang S, Cheng S, Furneaux H (1996) Purification and properties of HuD, a neuronal RNA-binding protein. J Biol Chem 271: 11518–11524

    PubMed  CAS  Google Scholar 

  • Chung S, Eckrich M, Perrone-Bizzozero N, Kohn D, Furneaux H (1997) The Elav-like proteins bind to a conserved regulatory element in the 3’ untranslated region of GAP-43 mRNA. J Biol Chem 272: 6595–6598

    Google Scholar 

  • Claverie JM (2001) What if there are only 30,000 human genes? Science 291: 1255–7

    PubMed  CAS  Google Scholar 

  • Coetzee WA, Amarillo Y, Chiu J, Chow A, Lau D, McCormack T, Moreno H, Nadal MS, Ozaita A

    Google Scholar 

  • Pountney D et al. (1999) Molecular diversity of K’ channels. Ann New York Acad Sci 868: 233–285

    Google Scholar 

  • Collett JW, Steele RE (1993) Alternative splicing of a neural-specific Src mRNA (Src+) is a rapid and protein synthesis-independent response to neural induction in Xenopus laevis. Dev Biol 158: 487–495

    PubMed  CAS  Google Scholar 

  • Colwill K, Pawson T, Andrews B, Prasad J, Manley JL, Bell JC, Duncan PI (1996) The Clk/Sty protein kinase phosphorylates SR splicing factors and regulates their intranuclear distribution. Embo J 15: 265–275

    PubMed  CAS  Google Scholar 

  • Consortium IHGS (2001) Initial sequencing and analysis of the human genome. Nature 409: 860–921

    Google Scholar 

  • Conte MR, Grune T, Ghuman J, Kelly G, Ladas A, Matthews S, Curry S (2000) Structure of tandem RNA recognition motifs from polypyrimidine tract binding protein reveals novel features of the RRM fold. Embo J 19: 3132–3141

    PubMed  CAS  Google Scholar 

  • Cooper TAMW (1997) The regulation of splice site selection, and its role in human disease. Am J Hum Genet 61: 259–266

    PubMed  CAS  Google Scholar 

  • Cote J, Chabot B (1997) Natural base-pairing interactions between 5’ splice site and branch site sequences affect mammalian 5’ splice site selection. Rna 3: 1248–1261

    PubMed  CAS  Google Scholar 

  • Cote J, Simard MJ, Chabot B (1999) An element in the 5’ common exon of the NCAM alternative splicing unit interacts with SR proteins and modulates 5’ splice site selection. Nucleic Acids Res 27: 2529–2537

    PubMed  CAS  Google Scholar 

  • Dal Toso R, Sommer B, Ewert M, Herb A, Pritchett DB, Bach A, Shivers BD, Seeburg PH (1989) The dopamine D2 receptor: two molecular forms generated by alternative splicing. Embo J 8: 4025–4034

    Google Scholar 

  • Daoud R, Da Penha Berzaghi M, Siedler F, Hubener M, Stamm S (1999) Activity-dependent regulation of alternative splicing patterns in the rat brain. Eur J Neurosci 11: 788–802

    PubMed  CAS  Google Scholar 

  • Darnell RB (1996) Onconeural antigens and the paraneoplastic neurological disorders: at the intersection of cancer, immunity and the brain. Proc Natl Acad Sci USA 93: 4529–4536

    PubMed  CAS  Google Scholar 

  • Del Gatto-Konczak F, Bourgeois CF, Le Guiner C, Kister L, Gesnel MC, Stevenin J, Breathnach R (2000) The RNA-binding protein TIA-1 is a novel mammalian splicing regulator acting through intron sequences adjacent to a 5’ splice site. Mol Cell Biol 20: 6287–6299

    PubMed  Google Scholar 

  • Dominski Z, Kole R (1991) Selection of splice sites in pre-mRNAs with short internal exons. Mol Cell Biol 11: 6075–6083

    Google Scholar 

  • Du C, McGuffin ME, Dauwalder B, Rabinow L, Mattox W (1998) Protein phosphorylation plays an essential role in the regulation of alternative splicing and sex determination in Drosophila. Mol Cell 2: 741–750

    PubMed  CAS  Google Scholar 

  • Ehlers MD, Fung ET, O’Brien RJ, Huganir RL (1998) Splice variant-specific interaction of the NMDA receptor subunit NR1 with neuronal intermediate filaments. J Neurosci 18: 720–730

    PubMed  CAS  Google Scholar 

  • Fan XC, Steitz JA (1998) Overexpression of HuR, a nuclear-cytoplasmic shuttling protein, increases the in vivo stability of ARE containing mRNAs. EMBO J 17: 3448–3460

    Google Scholar 

  • Fettiplace RFP (1999) Mechanisms of hair cell tuning. Annu Rev Physiol 61:809–83 Finkbeiner S, Greenberg ME (1998) Ca’ channel-regulated neuronal gene expression. J Neurobiol 37: 171–189

    Google Scholar 

  • Forch P, Puig O, Kedersha N, Martinez C, Granneman S, Seraphin B, Anderson P, Valcarcel J (2000) The apoptosis-promoting factor TIA-1 is a regulator of alternative pre-mRNA splicing. Mol Cell 6: 1089–1098

    PubMed  CAS  Google Scholar 

  • Ford LP, Watson J, Keene JD, Wilusz J (1999) ELAV proteins stabilize deadenylated intermediates in a novel in vitro mRNA deadenylation/degradation system. Genes Dev 13: 188–201

    PubMed  CAS  Google Scholar 

  • Gao FB, Keene JD (1996) Hel-Nl/Hel-N2 proteins are bound to poly(A)+ mRNA in granular RNP structures and are implicated in neuronal differentiation. J Cell Sci 109: 579–589

    PubMed  CAS  Google Scholar 

  • Gesemann M, Cavalli V, Denzer AJ, Brancaccio A, Schumacher B, Ruegg MA (1996) Alternative splicing of agrin alters its binding to heparin, dystroglycan, and the putative agrin receptor. Neuron 16: 755–767

    PubMed  CAS  Google Scholar 

  • Giros BSP, Martres MP, Riou JF, Emorine LJ, Schwartz JC (1989) Alternative splicing directs the expression of two D2 dopamine receptor isoforms. Nature 342: 923–926

    PubMed  CAS  Google Scholar 

  • Gooding C, Roberts GC, Smith CW (1998) Role of an inhibitory pyrimidine element and polypyrimidine tract binding protein in repression of a regulated alpha-tropomyosin exon. RNA 4: 85–100

    PubMed  CAS  Google Scholar 

  • Grabowski PJ, Black DL (2001) Alternative RNA splicing in the nervous system. Prog Neurobiol 65: 289–308

    PubMed  CAS  Google Scholar 

  • Grandy DKMM, Makam H, Stofko RE, Alfano M, Frothingham L, Fischer JBB-HK, Bunzow JR, Server AC et al. (1989) Cloning of the cDNA and gene for a human D2 dopamine receptor. Proc Natl Acad Sci USA 86: 9762–9766

    PubMed  CAS  Google Scholar 

  • Graveley BR (2000) Sorting out the complexity of SR protein functions. Rna 6: 1197–1211

    PubMed  CAS  Google Scholar 

  • Graveley BR (2001) Alternative splicing: increasing diversity in the proteomic world. Trends Genet 17: 100–107

    PubMed  CAS  Google Scholar 

  • Graveley BR, Maniatis T (1998) Arginine/serine-rich domains of SR proteins can function as activators of pre-mRNA splicing. Mol Cell 1: 765–771

    PubMed  CAS  Google Scholar 

  • Groenen PJ, Wansink DG, Coerwinkel M, van den Broek W, Jansen G, Wieringa B (2000) Constitutive and regulated modes of splicing produce six major myotonic dystrophy protein kinase ( DMPK) isoforms with distinct properties. Hum Mol Genet 9: 605–616

    Google Scholar 

  • Guiramand J, Montmayeur JP, Ceraline J, Bhatia M, Borrelli E (1995) Alternative splicing of the dopamine D2 receptor directs specificity of coupling to G-proteins. J Biol Chem 270: 7354–7358

    PubMed  CAS  Google Scholar 

  • Guo N, Kawamoto S (2000) An intronic downstream enhancer promotes 3’ splice site usage of a neural cell-specific exon. J Biol Chem 275: 33641–33649

    PubMed  CAS  Google Scholar 

  • Hanamura A, Caceres JF, Mayeda A, Franza BR Jr, Krainer AR (1998) Regulated tissue-specific expression of antagonistic pre-mRNA splicing factors. Rna 4: 430–444

    PubMed  CAS  Google Scholar 

  • Hedjran F,Yeakley JM, Huh GS, Hynes RO, Rosenfeld MG (1997) Control of alternative pre-mRNA splicing by distributed pentameric repeats. Proc Natl Acad Sci USA 94: 12343–12347

    Google Scholar 

  • Hille B (1992) Ionic channels of excitable membranes, 2nd edn. Sinauer Associates, Sunderland, MA

    Google Scholar 

  • Hisatsune C, Umemori H, Inoue T, Michikawa T, Kohda K, Mikoshiba K, Yamamoto T (1997) Phosphorylation-dependent regulation of N-methyl-n-aspartate receptors by calmodulin. J Biol Chem 272: 20805–20810

    PubMed  CAS  Google Scholar 

  • Hoch W (1999) Formation of the neuromuscular junction. Agrin and its unusual receptors. Eur J Biochem 265: 1–10

    PubMed  CAS  Google Scholar 

  • Holmberg J, Clarke DL, Frisen J (2000) Regulation of repulsion versus adhesion by different splice forms of an Eph receptor. Nature 408: 203–206

    PubMed  CAS  Google Scholar 

  • Hopf C, Hoch W (1996) Agrin binding to alpha-dystroglycan. Domains of agrin necessary to induce acetylcholine receptor clustering are overlapping but not identical to the alphadystroglycan-binding region. J Biol Chem 271: 5231–5236

    Google Scholar 

  • Hoshi T, Zagotta WN,Aldrich RW (1990) Biophysical and molecular mechanisms of Shaker potassium channel inactivation. Science 250: 533–538

    CAS  Google Scholar 

  • Hoshi T, Zagotta WN, Aldrich RW (1991) Two types of inactivation in Shaker K+ channels: effects of alterations in the carboxy-terminal region. Neuron 7: 547–556

    PubMed  CAS  Google Scholar 

  • Huh GS, Hynes RO (1994) Regulation of alternative pre-mRNA splicing by a novel repeated hexanucleotide element. Genes Dev 8: 1561–1574

    PubMed  CAS  Google Scholar 

  • Huntsman NMTB, Potkin SG, Bunney WE Jr, Jones EG (1998) Altered ratios of alternatively spliced long and short gamma2 subunit mRNAs of the gamma-amino butyrate type A receptor in prefrontal cortex of schizophrenics. Proc Natl Acad Sci USA 95: 15066–15071

    Google Scholar 

  • Imbert G, Saudou F, Yvert G, Devys D, Trottier Y, Gamier JM, Weber C, Mandel JL, Cancel G, Abbas N et al. (1996) Cloning of the gene for spinocerebellar ataxia 2 reveals a locus with high sensitivity to expanded CAG/glutamine repeats. Nat Genet 14: 285–291

    PubMed  CAS  Google Scholar 

  • Iverson LE, Rudy B (1990) The role of the divergent amino and carboxyl domains on the inactivation properties of potassium channels derived from the Shaker gene of Drosophila. J Neurosci 10: 2903–2916

    PubMed  CAS  Google Scholar 

  • Iverson LE, Tanouye MA, Lester HA, Davidson N, Rudy B (1988) A-type potassium channels expressed from Shaker locus cDNA. Proc Natl Acad Sci USA 85: 5723–5727

    PubMed  CAS  Google Scholar 

  • Iverson LE, Mottes JR, Yeager SA, Germeraad SE (1997) Tissue-specific alternative splicing of Shaker potassium channel transcripts results from distinct modes of regulating 3’ splice choice. J Neurobiol 32: 457–468

    PubMed  CAS  Google Scholar 

  • Jacquenet S, Mereau A, Bilodeau PS, Damier L, Stoltzfus CM, Branlant C (2001) A second exon splicing silencer within human immunodeficiency virus type 1 tat exon 2 represses splicing of Tat mRNA and binds protein hnRNP H. J Biol Chem 276: 40464–40475

    PubMed  CAS  Google Scholar 

  • Jensen KB, Dredge BK, Stefani G, Zhong R, Buckanovich RJ, Okano HJ, Yang YY, Darnell RB (2000a) Nova-1 regulates neuron-specific alternative splicing and is essential for neuronal viability. Neuron 25: 359–371

    PubMed  CAS  Google Scholar 

  • Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB (2000b) The tetranucleotide UCAY directs the specific recognition of RNA by the Nova K-homology 3 domain. Proc Natl Acad Sci USA 97: 5740–5745

    PubMed  CAS  Google Scholar 

  • Jones EM, Gray-Keller M, Art JJ, Fettiplace R (1999a) The functional role of alternative splicing of Ca(2+)-activated K+ channels in auditory hair cells, Ann NY Acad Sci 868: 379–385

    PubMed  CAS  Google Scholar 

  • Jones EMC, Gray-Keller M, Fettiplace R (1999b) The role of Ca2+-activated K+ channel spliced variants in the tonotopic organization of the turtle cochlea. J Physiol 518: 653–665

    PubMed  CAS  Google Scholar 

  • Journot L, Spengler D, Pantaloni C, Dumuis A, Sebben M, Bockaert J (1994) The PACAP receptor: generation by alternative splicing of functional diversity among G protein-coupled receptors in nerve cells. Semin Cell Biol 5: 263–272

    PubMed  CAS  Google Scholar 

  • Kan JL, Green MR (1999) Pre-mRNA splicing of IgM exons M1 and M2 is directed by a juxtaposed splicing enhancer and inhibitor. Genes Dev 13: 462–471

    PubMed  CAS  Google Scholar 

  • Kawamoto S (1996) Neuron-specific alternative splicing of nonmuscle myosin II heavy chain-B pre-mRNA requires a cis-acting intron sequence. J Biol Chem 271: 17613–17616

    PubMed  CAS  Google Scholar 

  • Kim M, Baro DJ, Lanning CC, Doshi M, Farnham J, Moskowitz HS, Peck JH, Olivera BM, Harris-Warrick RM (1997) Alternative splicing in the pore-forming region of shaker potassium channels. J Neurosci 17: 8213–8224

    PubMed  CAS  Google Scholar 

  • Koike M, Tsukada S, Tsuzuki K, Kijima H, Ozawa S (2000) Regulation of kinetic properties of GluR2 AMPA receptor channels by alternative splicing. J Neurosci 20: 2166–2174

    PubMed  CAS  Google Scholar 

  • Konig H, Ponta H, Herrlich P(1998) Coupling of signal transduction to alternative pre-mRNA splicing by a composite splice regulator. EMBO J 17: 2904–2913

    Google Scholar 

  • Koushika SP, Lisbin MJ, White K (1996) ELAV, a Drosophila neuron-specific protein, mediates the generation of an alternatively spliced neural protein isoform. Curr Biol 6: 1634–1641

    PubMed  CAS  Google Scholar 

  • Koushika SP, Soller M, DeSimone SM, Daub DM, White K (1999) Differential and inefficient splicing of a broadly expressed Drosophila erect wing transcript results in tissue-specific enrichment of the vital EWG protein isoform. Mol Cell Biol 19: 3998–4007

    PubMed  CAS  Google Scholar 

  • Krawczak M, Reiss J, Cooper DN (1992) The mutational spectrum of single base-pair substitutions in mRNA splice junctions of human genes: causes and consequences, Hum Genet 90: 41–54

    PubMed  CAS  Google Scholar 

  • Krishek BJ, Xie X, Blackstone C, Huganir RL, Moss SJ, Smart TG (1994) Regulation of GABAA receptor function by protein kinase C phosphorylation. Neuron 12: 1081–1095

    PubMed  CAS  Google Scholar 

  • Ladd AN, Charlet N, Cooper TA (2001) The CELF family of RNA binding proteins is implicated in cell-specific and developmentally regulated alternative splicing. Mol Cell Biol 21: 1285–1296

    PubMed  CAS  Google Scholar 

  • Lambolez B, Ropert N, Perrais D, Rossier J, Hestrin S (1996) Correlation between kinetics and RNA splicing of alpha-amino-3-hydroxy-5-methylisoxazole-4-propionic acid receptors in neocortical neurons. Proc Natl Acad Sci USA 93: 1797–1802

    PubMed  CAS  Google Scholar 

  • Le Corre S, Harper CG, Lopez P, Ward P, Catts S (2000) Increased levels of expression of an NMDARI splice variant in the superior temporal gyrus in schizophrenia. Neuroreport 11: 983–986

    PubMed  Google Scholar 

  • Lefebvre S, Burglen L, Frezal J, Munnich A, Melki J (1998) The role of the SMN gene in proximal spinal muscular atrophy. Hum Mol Genet 7: 1531–1536

    PubMed  CAS  Google Scholar 

  • Lin Z, Haus S, Edgerton J, Lipscombe D (1997) Identification of functionally distinct isoforms of the N-type Ca’ channel in rat sympathetic ganglia and brain. Neuron 18: 153–166

    PubMed  CAS  Google Scholar 

  • Lin Z, Lin Y, Schorge S, Pan JQ, Beierlein M, Lipscombe D (1999) Alternative splicing of a short cassette exon in alphalB generates functionally distinct N-type calcium channels in central and peripheral neurons. J Neurosci 19: 5322–5331

    PubMed  CAS  Google Scholar 

  • Lingle CJ, Solaro CR, Prakriya M, Ding JP (1996) Calcium-activated potassium channels in adrenal chromaffin cells. Ion Channels 4: 261–301

    PubMed  CAS  Google Scholar 

  • Lisbin MJ, Qiu J, White K (2001) The neuron-specific RNA-binding protein ELAV regulates neuroglian alternative splicing in neurons and binds directly to its pre-mRNA. Genes Dev 15: 2546–2561

    PubMed  CAS  Google Scholar 

  • Lisman JE, Fallon JR (1999) What maintains memories? Science 283: 339–340

    PubMed  CAS  Google Scholar 

  • Liu HX, Cartegni L, Zhang MQ, Krainer AR (2001) A mechanism for exon skipping caused by nonsense or missense mutations in BRCA1 and other genes. Nat Genet 27: 55–58

    PubMed  CAS  Google Scholar 

  • Liu S-QJ, Kaczmarek LK (1998) The expression of two splice variants of the Kv3.1 potassiumchannel gene is regulated by different signaling pathways. J Neurosci 18: 2881–2890

    PubMed  CAS  Google Scholar 

  • Lopez AJ (1998) Alternative splicing of pre-mRNA: developmental consequences and mechanisms of regulation. Annu Rev Genet 32: 279–305

    PubMed  CAS  Google Scholar 

  • Lundquist EA, Herman RK (1994) The mec-8 gene of Caenorhabditis elegans affects muscle and sensory neuron function and interacts with three other genes: unc-52, smu-1 and smu-2. Genetics 138: 83–101

    PubMed  CAS  Google Scholar 

  • Lundquist EA, Herman RK, Rogalski TM, Mullen GP, Moerman DG, Shaw JE (1996) The mec-8 gene of C. elegans encodes a protein with two RNA recognition motifs and regulates alternative splicing of unc-52 transcripts. Development 122: 1601–1610

    PubMed  CAS  Google Scholar 

  • Lynch KW, Weiss A (2000) A model system for activation-induced alternative splicing of CD45 pre-mRNA in T cells implicates protein kinase C and Ras. Mol Cell Bio120: 70–80

    Google Scholar 

  • Mankodi A, Logigian E, Callahan L, McClain C, White R, Henderson D, Krym M, Thornton CA (2000) Myotonic dystrophy in transgenic mice expressing an expanded CUG repeat. Science 289: 1769–1773

    PubMed  CAS  Google Scholar 

  • Manley JL, Tacke R (1996) SR proteins and splicing control. Genes Dev 10: 1569–1579

    PubMed  CAS  Google Scholar 

  • Markovtsov V, Nikolic JM, Goldman JA, Turck CW, Chou MY, Black DL (2000) Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein. Mol Cell Biol 20: 7463–7479

    PubMed  CAS  Google Scholar 

  • Matera AG (1999) RNA splicing: more clues from spinal muscular atrophy. Curr Biol 9:R140–R142 Mattaj IW (1998) Ribonucleoprotein assembly: clues from spinal muscular atrophy. Curr Biol 8: 93–95

    Google Scholar 

  • Mayeda A, Helfman DM, Krainer AR (1993) Modulation of exon skipping and inclusion by heterogeneous nuclear ribonucleoprotein Al and pre-mRNA splicing factor SF2/ASF. Mol Cell Biol 13:2993–3001 [published erratum appears in Mol Cell Biol 1993; l3 (7):4458]

    Google Scholar 

  • McCullough AJ, Berget SM (2000) An intronic splicing enhancer binds Ul snRNPs to enhance splicing and select 5’ splice sites. Mol Cell Biol 20: 9225–9235

    PubMed  CAS  Google Scholar 

  • Miller JW, Urbinati CR, Teng-Umnuay P, Stenberg MG, Byrne BJ, Thornton CA, Swanson MS (2000) Recruitment of human muscleblind proteins to ( CUG)(n) expansions associated with myotonic dystrophy. EMBO J 19: 4439–4448

    Google Scholar 

  • Min H, Chan RC, Black DL (1995) The generally expressed hnRNP F is involved in a neural-specific pre-mRNA splicing event. Genes Dev 9: 2659–2671

    PubMed  CAS  Google Scholar 

  • Min H, Turck CW, Nikolic JM, Black DL (1997) A new regulatory protein, KSRP, mediates exon inclusion through an intronic splicing enhancer. Genes Dev 11: 1023–1036

    Google Scholar 

  • Missler M, Sudhof TC (1998) Neurexins: three genes and 1001 products. Trends Genet 14:20–26 Missler M, Fernandez-Chacon R, Sudhof TC (1998) The making of neurexins. J Neurochem 71: 1339–1347

    PubMed  CAS  Google Scholar 

  • Modafferi EF, Black DL (1997) A complex intronic splicing enhancer from the c-src pre-mRNA activates inclusion of a heterologous exon. Mol Cell Biol 17: 6537–6545

    PubMed  CAS  Google Scholar 

  • Modafferi EF, Black DL (1999) Combinatorial control of a neuron-specific exon. RNA 5: 687–706

    PubMed  CAS  Google Scholar 

  • Mottes JR, Iverson LE (1995) Tissue-specific alternative splicing of hybrid Shaker/lacZ genes correlates with kinetic differences in Shaker K+ currents in vivo. Neuron 14: 613–623

    PubMed  CAS  Google Scholar 

  • Mulligan GJ, Guo W, Wormsley S, Helfman DM (1992) Polypyrimidine tract binding protein interacts with sequences involved in alternative splicing of beta-tropomyosin pre-mRNA. J Biol Chem 267: 25480–25487

    PubMed  CAS  Google Scholar 

  • Musshoff U, Schunke U, Kohling R, Speckmann EJ (2000) Alternative splicing of the NMDARL glutamate receptor subunit in human temporal lobe epilepsy. Mol Brain Res 76: 377–384

    PubMed  CAS  Google Scholar 

  • Nakai K, Sakamoto H (1994) Construction of a novel database containing aberrant splicing mutations of mammalian genes. Gene 141: 171–177

    PubMed  CAS  Google Scholar 

  • Navaratnam DS, Bell TJ, Tu TD, Cohen EL, Oberholtzer JC (1997) Differential distribution of Ca2+-activated K+ channel splice variants among hair cells along the tonotopic axis of the chick cochlea. Neuron 19: 1077–1085

    PubMed  CAS  Google Scholar 

  • O’Neill JP, Rogan PK, Cariello N, Nicklas JA (1998) Mutations that alter RNA splicing of the human HPRT gene: a review of the spectrum. Mutat Res 411: 179–214

    PubMed  Google Scholar 

  • O’Toole JJ, Deyst KA, Bowe MA, Nastuk MA, McKechnie BA, Fallon JR (1996) Alternative splicing of agrin regulates its binding to heparin alpha-dystroglycan, and the cell surface. Proc Natl Acad Sci USA 93: 7369–7374

    PubMed  Google Scholar 

  • Palm K, Belluardo N, Metsis M, Timmusk T (1998) Neuronal expression of zinc finger transcription factor REST/NRSF/XBR gene. J Neurosci 18: 1280–1296

    PubMed  CAS  Google Scholar 

  • Partin KM, Bowie D, Mayer ML (1995) Structural determinants of allosteric regulation in alternatively spliced AMPA receptors. Neuron 14: 833–843

    PubMed  CAS  Google Scholar 

  • Peng SS, Chen CY, Xu N, Shyu AB (1998) RNA stabilization by the AU-rich element binding protein, HuR, an ELAV protein. EMBO J 17: 3461–3470

    Google Scholar 

  • Philips AV, Cooper TA (2000) RNA processing and human disease. Cell Mol Life Sci 57: 235249

    Google Scholar 

  • Philips AV, Timchenko LT, Cooper TA (1998) Disruption of splicing regulated by a CUG-binding protein in myotonic dystrophy. Science 280: 737–741

    PubMed  CAS  Google Scholar 

  • Polydorides AD, Okano HJ, Yang YY, Stefani G, Darnell RB (2000) A brain-enriched polypyrimidine tract-binding protein antagonizes the ability of Nova to regulate neuron-specific alternative splicing. Proc Natl Acad Sci USA 97: 6350–6355

    PubMed  CAS  Google Scholar 

  • Prasad J, Colwill K, Pawson T, Manley JL (1999) The protein kinase Clk/Sty directly modulates SR protein activity: both hyper-and hypophosphorylation inhibit splicing. Mol Cell Biol 19: 6991–7000

    PubMed  CAS  Google Scholar 

  • Pulst SM, Nechiporuk A, Nechiporuk T, Gispert S, Chen XN, Lopes-Cendes I, Pearlman S, Starkman S, Orozco-Diaz G, Lunkes A et al. (1996) Moderate expansion of a normally biallelic trinucleotide repeat in spinocerebellar ataxia type 2. Nat Genet 14: 269–276

    PubMed  CAS  Google Scholar 

  • Quinlan JJ, Firestone LL, Homanics GE (2000) Mice lacking the long splice variant of the gamma 2 subunit of the GABA ( A) receptor are more sensitive to benzodiazepines, Pharmacol Biochem Behav 66: 371–374

    Google Scholar 

  • Rafiki A, Ben-Ari Y, Khrestchatisky M, Represa A (1998) Long-lasting enhanced expression in the rat hippocampus of NMDAR1 splice variants in a kainate model of epilepsy. Eur J Neurosci 10: 497–507

    PubMed  CAS  Google Scholar 

  • Reenan RA, Hanrahan CJ, Barry G (2000) The mle(napts) RNA helicase mutation in Drosophila results in a splicing catastrophe of the para Na+ channel transcript in a region of RNA editing. Neuron 25: 139–149

    PubMed  CAS  Google Scholar 

  • Roberts R, Timchenko NA, Miller JW, Reddy S, Caskey CT, Swanson MS, Timchenko LT (1997) Altered phosphorylation and intracellular distribution of a ( CUG)n triplet repeat RNA-binding protein in patients with myotonic dystrophy and in myotonin protein kinase knockout mice. Proc Natl Acad Sci USA 94: 13221–13226

    Google Scholar 

  • Rodger J, Davis S, Laroche S, Mallet J, Hicks A (1998) Induction of long-term potentiation in vivo regulates alternate splicing to alter syntaxin 3 isoform expression in rat dentate gyrus. J Neurochem 71: 666–675

    PubMed  CAS  Google Scholar 

  • Rosenblatt K, Sun PZP, Heller S, Hudspeth AJ (1997) Distribution of Ca2+-activated K+ channel isoforms along the tonotopic gradient of the chicken’s cochlea. Neuron 19: 1061–1075

    PubMed  CAS  Google Scholar 

  • Rosenfeld MG, Mermod JJ, Amara SG, Swanson LW, Sawchenko PE, Rivier J, Vale WW, Evans RM (1983) Production of a novel neuropeptide encoded by the calcitonin gene via tissue-specific RNA processing. Nature 304: 129–135

    PubMed  CAS  Google Scholar 

  • Rosoff ML, Burglin TR, Li C (1992) Alternatively spliced transcripts of the flp-1 gene encode distinct FMRFamide-like peptides in Caenorhabditis elegans. J Neurosci 12: 2356–2361

    PubMed  CAS  Google Scholar 

  • Rumbaugh G, Prybylowski K, Wang JF, Vicini S (2000) Exon 5 and spermine regulate deactivation of NMDA receptor subtypes. J Neurophys 83: 1300–1306

    CAS  Google Scholar 

  • Ryan KJ, Cooper TA (1996) Muscle-specific splicing enhancers regulate inclusion of the cardiac troponin T alternative exon in embryonic skeletal muscle. Mol Cell Biol 16: 4014–4023

    PubMed  CAS  Google Scholar 

  • Sanpei K, Takano H, Igarashi S, Sato T, Oyake M, Sasaki H, Wakisaka A, Tashiro K, Ishida Y, Ikeuchi T et al. (1996) Identification of the spinocerebellar ataxia type 2 gene using a direct identification of repeat expansion and cloning technique, DIRECT. Nat Genet 14: 277–284

    Google Scholar 

  • Santama N, Benjamin PR, Burke JF (1995) Alternative RNA splicing generates diversity of neuropeptide expression in the brain of the snail Lymnaea: in situ analysis of mutually exclusive transcripts of the FMRFamide gene. Eur J Neurosci 7: 65–76

    PubMed  CAS  Google Scholar 

  • Santoni MJ, Barthels D, Vopper G, Boned A, Goridis C, Wille W (1989) Differential exon usage involving an unusual splicing mechanism generates at least eight types of NCAM cDNA in mouse brain. Embo J 8: 385–392

    PubMed  CAS  Google Scholar 

  • Scheiffele P, Fan J, Choih J, Fetter R, Serafini T (2000) Neuroligin expressed in nonneuronal cells triggers presynaptic development in contacting axons. Cell 101: 657–669

    PubMed  CAS  Google Scholar 

  • Schmucker D, Clemens JC, Shu H, Worby CA, Xiao J, Muda M, Dixon JE, Zipursky SL (2000) Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity. Cell 101: 671–684

    Google Scholar 

  • Schoenherr CJ, Anderson DJ (1995) The neuron-restrictive silencer factor (NRSF): a coordinate repressor of multiple neuron-specific genes. Science 267: 1360–1363

    PubMed  CAS  Google Scholar 

  • Schwarz TL, Tempel BL, Papazian DM, Jan YN, Jan LY (1988) Multiple potassium-channel components are produced by alternative splicing at the Shaker locus in Drosophila. Nature 331:137–142 published erratum appears in Nature 1988 332(6166):740

    Google Scholar 

  • Sendtner M (2001) Molecular mechanisms in spinal muscular atrophy: models and perspectives. Curr Opin Neurol 14: 629–634

    PubMed  CAS  Google Scholar 

  • Seong JY, Park S, Kim K (1999) Enhanced splicing of the first intron from the gonadotropinreleasing hormone (GnRH) primary transcript is a prerequisite for mature GnRH messenger RNA: presence of GnRH neuron-specific splicing factors. Mol Endocrinol 13: 1882–1895

    PubMed  CAS  Google Scholar 

  • Shibata A, Hattori M, Suda H, Sakaki Y (1996) Identification of cis-acting elements involved in an alternative splicing of the amyloid precursor protein ( APP) gene. Gene 175: 203–208

    Google Scholar 

  • Shifrin VI, Neel BG (1993) Growth factor-inducible alternative splicing of nontransmembrane phosphotyrosine phosphatase PTP-1B pre-mRNA. J Biol Chem 268: 25376–25384

    PubMed  CAS  Google Scholar 

  • Shimojo M, Paquette AJ, Anderson DJ, Hersh LB (1999) Protein kinase A regulates cholinergic gene expression in PC12 cells: REST4 silences the silencing activity of neuron-restrictive silencer factor/REST. Mol Cell Biol 19: 6788–6795

    PubMed  CAS  Google Scholar 

  • Siebel CW, Kanaar R, Rio DC (1994) Regulation of tissue-specific P-element pre-mRNA splicing requires the RNA-binding protein PSI. Genes Dev 8: 1713–1725

    PubMed  CAS  Google Scholar 

  • Sirand-Pugnet P, Durosay P, Brody E, Marie J (1995) An intronic ( A/U)GGG repeat enhances the splicing of an alternative intron of the chicken beta-tropomyosin pre-mRNA. Nucleic Acids Res 23: 3501–3507

    Google Scholar 

  • Smith CW, Valcarcel J (2000) Alternative pre-mRNA splicing: the logic of combinatorial control. Trends Biochem Sci 25: 381–388

    PubMed  CAS  Google Scholar 

  • Smith MA, Fanger GR, O’Connor LT, Bridle P, Maue RA (1997) Selective regulation of agrin mRNA induction and alternative splicing in PC12 cells by Ras-dependent actions of nerve growth factor. J Biol Chem 272: 15675–15681

    PubMed  CAS  Google Scholar 

  • Solaro CR, Nelson C, Wei A, Salkoff L, Lingle CJ (1995) Cytoplasmic Mg-2+ modulates Ca-2+-dependent activation of MSLO by binding to a low affinity site on the channel core. Biophysical J 68: A30

    Google Scholar 

  • Staley JP, Guthrie C (1998) Mechanical devices of the spliceosome: motors, clocks, springs, and things. Cell 92: 315–326

    PubMed  CAS  Google Scholar 

  • Sutcliffe JG, Milner RJ (1988) Alternative mRNA splicing: the Shaker gene. Trends Genet 4: 297–299

    PubMed  CAS  Google Scholar 

  • Tacke R, Goridis C (1991) Alternative splicing in the neural cell adhesion molecule pre-mRNA: regulation of exon 18 skipping depends on the 5’-splice site. Genes Dev 5: 1416–1429

    PubMed  CAS  Google Scholar 

  • Taneja KL, McCurrach M, Schalling M, Housman D, Singer RH (1995) Foci of trinucleotide repeat transcripts in nuclei of myotonic dystrophy cells and tissues. J Cell Biol 128: 995–1002

    PubMed  CAS  Google Scholar 

  • Tange TO, Damgaard CK, Guth S, Valcarcel J, Kjems J (2001) The hnRNP Al protein regulates HIV-1 tat splicing via a novel intron silencer element. EMBO J 20: 5748–5758

    PubMed  CAS  Google Scholar 

  • Thackeray JR, Ganetzky B (1994) Developmentally regulated alternative splicing generates a complex array of Drosophila para sodium channel isoforms. J Neurosci 14: 2569–2578

    PubMed  CAS  Google Scholar 

  • Thackeray JR, Ganetzky B (1995) Conserved alternative splicing patterns and splicing signals in the Drosophila sodium channel gene para. Genetics 141: 203–214

    PubMed  CAS  Google Scholar 

  • Thomas WS, O’Dowd DK, Smith MA (1993) Developmental expression and alternative splicing of chick agrin RNA. Dev Biol 158: 523–535

    PubMed  CAS  Google Scholar 

  • Timchenko LT (1999) Myotonic dystrophy: the role of RNA CUG triplet repeats, Am J Hum Genet 64: 360–364

    PubMed  CAS  Google Scholar 

  • Timchenko LT, Miller JW, Timchenko NA, DeVore DR, Datar KV, Lin L, Roberts R, Caskey CT, Swanson MS (1996) Identification of a ( CUG)n triplet repeat RNA-binding protein and its expression in myotonic dystrophy. Nucleic Acids Res 24: 4407–4414

    Google Scholar 

  • Timchenko NA, Welm AL, Lu X, Timchenko LT (1999) CUG repeat binding protein (CUGBP1) interacts with the 5’ region of C/EBPbeta mRNA and regulates translation of C/EBPbeta isoforms. Nucleic Acids Res 27: 4517–4525

    PubMed  CAS  Google Scholar 

  • Timpe LC, Schwarz TL, Tempel BL, Papazian DM, Jan YN, Jan LY (1988) Expression of functional potassium channels from Shaker cDNA in Xenopus oocytes. Nature 331: 143–145

    PubMed  CAS  Google Scholar 

  • Tiscornia G, Mahadevan MS (2000) Myotonic dystrophy: the role of the CUG triplet repeats in splicing of a novel DMPK exon and altered cytoplasmic DMPK mRNA isoform ratios. Mol Cell 5: 959–967

    PubMed  CAS  Google Scholar 

  • Traynelis SF, Burgess MF, Zheng F, Lyuboslaysky P, Powers JL (1998) Control of voltage-independent zinc inhibition of NMDA receptors by the NR1 subunit. J Neurosci 18: 6163–6175

    PubMed  CAS  Google Scholar 

  • Valcarcel J, Gebauer F (1997) Post-transcriptional regulation: the dawn of PTB. Curr Biol 7: R705 - R708

    PubMed  CAS  Google Scholar 

  • Vallano ML, Lambolez B, Audinat E, Rossier J (1996) Neuronal activity differentially regulates NMDA receptor subunit expression in cerebellar granule cells. J Neurosci 16: 631–639

    PubMed  CAS  Google Scholar 

  • Vallano ML, Beaman-Hall CM, Benmansour S (1999) Ca2+ and pH modulate alternative splicing of exon 5 in NMDA receptor subunit 1. Neuroreport 10: 3659–3664

    PubMed  CAS  Google Scholar 

  • van der Houven van Oordt W, Diaz-Meco MT, Lozano J, Krainer AR, Moscat J, Caceres JF (2000) The MKK(3/6)-p38-signaling cascade alters the subcellular distribution of hnRNP Al and modulates alternative splicing regulation. J Cell Biol 149: 307–316

    Google Scholar 

  • van Golen FA, Li KW, de Lange RP, Jespersen S, Geraerts WP (1995) Mutually exclusive neuronal expression of peptides encoded by the FMRFa gene underlies a differential control of copulation in Lymnaea. J Biol Chem 270: 28487–28493

    PubMed  Google Scholar 

  • Varani G, Nagai K (1998) RNA recognition by RNP proteins during RNA processing. Annu Rev Biophys Biomol Struct 27: 407–445

    PubMed  CAS  Google Scholar 

  • Vawter MP, Frye MA, Hemperly JJ, VanderPutten DM, Usen N, Doherty P, Saffell JL, Issa F, Post RM, Wyatt RJ, Freed WJ (2000) Elevated concentration of N-CAM VASE isoforms in schizophrenia. J Psychiatr Res 34: 25–34

    PubMed  CAS  Google Scholar 

  • Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell MD, Evans CA, Holt RA (2001) The sequence of the human genome. Science 291: 1304–1351

    PubMed  CAS  Google Scholar 

  • Vergara C, Latorre R, Marrion NV, Adelman JP (1998) Calcium-activated potassium channels. Curr Opin Neurobiol 8: 321–329

    PubMed  CAS  Google Scholar 

  • Vezzani A, Speciale C, Della Vedova F, Tamburin M, Benatti L (1995) Alternative splicing at the C-terminal but not at the N-terminal domain of the NMDA receptor NR1 is altered in the kindled hippocampus. Eur J Neurosci 7: 2513–2517

    PubMed  CAS  Google Scholar 

  • Wafford KA, Bain CJ, Whiting PJ, Kemp JA (1993) Functional comparison of the role of gamma subunits in recombinant human gamma-aminobutyric acidA/benzodiazepine receptors. Mol Pharmacol 44: 437–442

    PubMed  CAS  Google Scholar 

  • Wagner EJ, Garcia-Blanco MA (2001) Polypyrimidine tract binding protein antagonizes exon definition. Mol Cell Biol 21: 3281–3288

    PubMed  CAS  Google Scholar 

  • Wagner EJ, Carstens RP, Garcia-Blanco MA (1999) A novel isoform ratio switch of the polypyrimidine tract binding protein. Electrophoresis 20: 1082–1086

    PubMed  CAS  Google Scholar 

  • Walsh FS, Doherty P(1997) Neural cell adhesion molecules of the immunoglobulin superfamily: role in axon growth and guidance. Annu Rev Cell Devel Biol 13: 425–456

    Google Scholar 

  • Wang A, Cohen DS, Palmer E, Sheppard D (1991) Polarized regulation of fibronectin secretion and alternative splicing by transforming growth factor. J Biol Chem 266: 15598–15601

    PubMed  CAS  Google Scholar 

  • Wang HY, Xu X, Ding JH, Bermingham JR Jr, Fu XD (2001) SC35 plays a role in T cell development and alternative splicing of CD45. Mol Cell 7: 331–342

    PubMed  CAS  Google Scholar 

  • Wang J, Takagaki Y, Manley JL (1996) Targeted disruption of an essential vertebrate gene: ASF/SF2 is required for cell viability. Genes Dev 10: 2588–2599

    PubMed  CAS  Google Scholar 

  • Wang Z, Grabowski PJ (1996) Cell-and stage-specific splicing events resolved in specialized neurons of the rat cerebellum. RNA 2: 1241–1253

    PubMed  CAS  Google Scholar 

  • Weg-Remers S, Ponta H, Herrlich P, Konig H (2001) Regulation of alternative pre-mRNA splicing by the ERK MAP-kinase pathway. EMBO J 20: 4194–4203

    PubMed  CAS  Google Scholar 

  • Wei N, Lin CQ, Modafferi EF, Gomes WA, Black DL (1997) A unique intronic splicing enhancer controls the inclusion of the agrin Y exon. RNA 3: 1275–1288

    PubMed  CAS  Google Scholar 

  • Weiland S, Bertrand D, Leonard S (2000) Neuronal nicotinic acetylcholine receptors: from the gene to the disease. Behav Brain Res 113: 43–56

    PubMed  CAS  Google Scholar 

  • Whiting P, McKernan RM, Iversen LL (1990) Another mechanism for creating diversity in gammaaminobutyrate type A receptors: RNA splicing directs expression of two forms of gamma 2 phosphorylation site. Proc Natl Acad Sci USA 87: 9966–9970

    PubMed  CAS  Google Scholar 

  • Wilhelmsen KC (1999) The tangled biology of tau. Proc Natl Acad Sci USA 96: 7120–7121

    PubMed  CAS  Google Scholar 

  • Wu Q, Maniatis T (1999) A striking organization of a large family of human neural cadherin-like cell adhesion genes. Cell 97: 779–790

    PubMed  CAS  Google Scholar 

  • Wu Q, Maniatis T (2000) Large exons encoding multiple ectodomains are a characteristic feature of protocadherin genes. Proc Natl Acad Sci USA 97: 3124–3129

    PubMed  CAS  Google Scholar 

  • Xiao SH, Manley JL (1998) Phosphorylation-dephosphorylation differentially affects activities of splicing factor ASF/SF2. EMBO J 17: 6359–6367

    PubMed  CAS  Google Scholar 

  • Xie J, Black DL (2001) A CaMK IV responsive RNA element mediates depolarization-induced alternative splicing of ion channels. Nature 410: 936–939

    PubMed  CAS  Google Scholar 

  • Xie J, McCobb DP (1998) Control of alternative splicing of potassium channels by stress hormones. Science 280: 443–446

    PubMed  CAS  Google Scholar 

  • Yeakley JM, Tronchere H, Olesen J, Dyck JA, Wang HY, Fu XD (1999) Phosphorylation regulates in vivo interaction and molecular targeting of serine/arginine-rich pre-mRNA splicing factors. J Cell Biol 145: 447–455

    PubMed  CAS  Google Scholar 

  • Yun CY, Fu XD (2000) Conserved SR protein kinase functions in nuclear import and its action is counteracted by arginine methylation in Saccharomyces cerevisiae. J Cell Biol 150: 707–718

    PubMed  CAS  Google Scholar 

  • Zacharias DA, Strehler EE (1996) Change in plasma membrane Ca2(+)-ATPase splice-variant expression in response to a rise in intracellular Ca2+. Curr Biol 6: 1642–1652

    PubMed  CAS  Google Scholar 

  • Zhang L, Ashiya M, Sherman TG, Grabowski PJ (1996) Essential nucleotides direct neuron-specific splicing of gamma 2 pre-mRNA. RNA 2: 682–698

    PubMed  CAS  Google Scholar 

  • Zhang L, Liu W, Grabowski PJ (1999) Coordinate repression of a trio of neuron-specific splicing events by the splicing regulator PTB. RNA 5: 117–130

    PubMed  CAS  Google Scholar 

  • Zukin R (1995) Alternatively spliced isoforms of the NMDAR1 receptor subunit. Trends Neurosci 7: 306–313

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2003 Springer-Verlag Berlin Heidelberg

About this chapter

Cite this chapter

Black, D.L., Grabowski, P.J. (2003). Alternative Pre-mRNA Splicing and Neuronal Function. In: Jeanteur, P. (eds) Regulation of Alternative Splicing. Progress in Molecular and Subcellular Biology, vol 31. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-09728-1_7

Download citation

  • DOI: https://doi.org/10.1007/978-3-662-09728-1_7

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-07858-3

  • Online ISBN: 978-3-662-09728-1

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics