Essentiality of a non-RING element in priming donor ubiquitin for catalysis by a monomeric E3

Nat Struct Mol Biol. 2013 Aug;20(8):982-986. doi: 10.1038/nsmb.2621. Epub 2013 Jul 14.

Abstract

RING E3 ligases catalyze the transfer of ubiquitin (Ub) from E2 ubiquitin-conjugating enzyme thioesterified with Ub (E2~Ub) to substrate. For RING E3 dimers, the RING domain of one subunit and tail of the second cooperate to prime Ub, but how this is accomplished by monomeric RING E3s in the absence of a tail-like component is currently unknown. Here, we present a crystal structure of a monomeric RING E3, Tyr363-phosphorylated human CBL-B, bound to a stabilized Ub-linked E2, revealing a similar mechanism in activating E2~Ub. Both pTyr363 and the pTyr363-induced element interact directly with Ub's Ile36 surface, improving the catalytic efficiency of Ub transfer by ~200-fold. Hence, interactions outside the canonical RING domain are crucial for optimizing Ub transfer in both monomeric and dimeric RING E3s. We propose that an additional non-RING Ub-priming element may be a common RING E3 feature.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptor Proteins, Signal Transducing / chemistry*
  • Adaptor Proteins, Signal Transducing / genetics
  • Adaptor Proteins, Signal Transducing / metabolism*
  • Amino Acid Sequence
  • Crystallization
  • Humans
  • Kinetics
  • Magnetic Resonance Spectroscopy
  • Models, Molecular*
  • Molecular Sequence Data
  • Phosphorylation
  • Protein Conformation*
  • Proto-Oncogene Proteins c-cbl / chemistry*
  • Proto-Oncogene Proteins c-cbl / genetics
  • Proto-Oncogene Proteins c-cbl / metabolism*
  • Sequence Alignment
  • Ubiquitin / metabolism*
  • Ubiquitin-Conjugating Enzymes / chemistry*
  • Ubiquitin-Conjugating Enzymes / metabolism

Substances

  • Adaptor Proteins, Signal Transducing
  • Ubiquitin
  • Ubiquitin-Conjugating Enzymes
  • CBLB protein, human
  • Proto-Oncogene Proteins c-cbl

Associated data

  • PDB/3ZNI