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RNA pp 29–41Cite as

Synthesis of RNA by In Vitro Transcription

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 703))

Abstract

In vitro transcription is a simple procedure that allows for template-directed synthesis of RNA molecules of any sequence from short oligonucleotides to those of several kilobases in μg to mg quantities. It is based on the engineering of a template that includes a bacteriophage promoter sequence (e.g. from the T7 coliphage) upstream of the sequence of interest followed by transcription using the corresponding RNA polymerase. In vitro transcripts are used in analytical techniques (e.g. hybridization analysis), structural studies (for NMR and X-ray crystallography), in biochemical and genetic studies (e.g. as antisense reagents), and as functional molecules (ribozymes and aptamers).

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References

  1. Milligan, J. F., Uhlenbeck, O. C. (1989) Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol 180, 51–62.

    Article  CAS  PubMed  Google Scholar 

  2. Gruegelsiepe, H., Schön, A., Kirsebom, L. A., Hartmann, R. K. (2005) Enzymatic RNA synthesis using bacteriophage T7 RNA polymerase, in: (Hartmann, R. K., Bindereif, A., Schön A., Westhof E., eds.), Handbook of RNA Biochemistry. WILEY-VCH Verlag GmbH & Co. KGaA, Germany, pp. 3–21.

    Chapter  Google Scholar 

  3. Milligan, J. F., Groebe, D. R., Witherell, G. W., Uhlenbeck, O. C. (1987) Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res 15, 8783–8798.

    Article  CAS  PubMed  Google Scholar 

  4. Huang, F., Yarus, M. (1997) 5-RNA self-capping from guanosine diphosphate. Biochemistry 36, 6557–6563.

    Article  CAS  PubMed  Google Scholar 

  5. Jeng, S. T., Gardner, J. F., Gumport, R. I. (1990) Transcription termination by bacteriophage T7 RNA polymerase at rho-independent terminators. J Biol Chem 265, 3823–3830.

    CAS  PubMed  Google Scholar 

  6. Dunn, J. J., Studier, F. W. (1983) Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements. J Mol Biol 166, 477–535.

    Article  CAS  PubMed  Google Scholar 

  7. Brakmann, S., Grzeszik, S. (2001) An error-prone T7 RNA polymerase mutant generated by directed evolution. Chembiochem 2, 212–219.

    Article  CAS  PubMed  Google Scholar 

  8. Pleiss, J. A., Derrick, M. L., Uhlenbeck, O. C. (1998) T7 RNA polymerase produces 5 end heterogeneity during in vitro transcription from certain templates. RNA 4, 1313–1317.

    Article  CAS  PubMed  Google Scholar 

  9. Helm, M., Brule, H., Giege, R., Florentz, C. (1999) More mistakes by T7 RNA polymerase at the 5 ends of in vitro-transcribed RNAs. RNA 5, 618–621.

    Article  CAS  PubMed  Google Scholar 

  10. Fechter, P., Rudinger, J., Giege, R., Theobald-Dietrich, A. (1998) Ribozyme processed tRNA transcripts with unfriendly internal promoter for T7 RNA polymerase: production and activity. FEBS Lett 436, 99–103.

    Article  CAS  PubMed  Google Scholar 

  11. Price, S. R., Ito, N., Oubridge, C., Avis, J. M., Nagai, K. (1995) Crystallization of RNA-protein complexes I. Methods for the large-scale preparation of RNA suitable for crystallographic studies. J Mol Biol 249, 398–408.

    Article  CAS  PubMed  Google Scholar 

  12. Schurer, H., Lang, K., Schuster, J., Morl, M. (2002) A universal method to produce in vitro transcripts with homogeneous 3 ends. Nucleic Acids Res 30, e56.

    Article  PubMed  Google Scholar 

  13. Bevilacqua, P. C., Brown, T. S., Nakano, S., Yajima, R. (2004) Catalytic roles for proton transfer and protonation in ribozymes. Biopolymers 73, 90–109.

    Article  CAS  PubMed  Google Scholar 

  14. Suydam, I. T., Strobel, S. A., Daniel, H. (2009) Nucleotide analog interference mapping. Methods Enzymol 468, 3–30.

    Google Scholar 

  15. Sousa, R., Padilla, R. (1995) A mutant T7 RNA polymerase as a DNA polymerase. EMBO J 14, 4609–4621.

    CAS  PubMed  Google Scholar 

  16. Ichetovkin, I. E., Abramochkin, G., Shrader, T. E. (1997) Substrate recognition by the leucyl/phenylalanyl-tRNA-protein transferase. Conservation within the enzyme family and localization to the trypsin-resistant domain. J Biol Chem 272, 33009–33014.

    Article  CAS  PubMed  Google Scholar 

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Correspondence to Benoît Masquida .

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Beckert, B., Masquida, B. (2011). Synthesis of RNA by In Vitro Transcription. In: Nielsen, H. (eds) RNA. Methods in Molecular Biology, vol 703. Humana Press. https://doi.org/10.1007/978-1-59745-248-9_3

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  • DOI: https://doi.org/10.1007/978-1-59745-248-9_3

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  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-913-0

  • Online ISBN: 978-1-59745-248-9

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